View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_51 (Length: 254)
Name: NF1339_low_51
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14003312 - 14003088
Alignment:
| Q |
1 |
agatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctcggtcgttcctttaacataaccgaagaaggtattcgtccactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14003312 |
agatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctcagtcgttcctttaacataaccgaagaaggtattcgtccgctt |
14003213 |
T |
|
| Q |
101 |
ttagagagttgtcataagattagacatttagacttaacctgtttaagtcttaagtcacttggaacgaactttgatcttcccgacctggaggtgttgaact |
200 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
14003212 |
ttagagagttgtcgtaagattagacatttaaacttaacctgtttaagtcttaagtcacttggaacgaacttcgatcttcccgaccttgaggtgttgaact |
14003113 |
T |
|
| Q |
201 |
tgacaaatacagaagtggatgatga |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
14003112 |
tgacaaatacagaagtggatgatga |
14003088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5767495 - 5767719
Alignment:
| Q |
1 |
agatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctcggtcgttcctttaacataaccgaagaaggtattcgtccactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||| ||||||||||||||||| ||| |
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| T |
5767495 |
agatcaaaatatcatcatgtttgctgcccttttccccaatctgcagcagcttcatctcagttgctcctataacataactgaagaaggtattcgtccgctt |
5767594 |
T |
|
| Q |
101 |
ttagagagttgtcataagattagacatttagacttaacctgtttaagtcttaagtcacttggaacgaactttgatcttcccgacctggaggtgttgaact |
200 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5767595 |
ttagagagttgtcgtaagattagacatttaaacttaacctgtttaagtcttaagtcacttggaacgaactttgatcttcccgaccttgaggtgttgaact |
5767694 |
T |
|
| Q |
201 |
tgacaaatacagaagtggatgatga |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5767695 |
tgacaaatacagaagtggatgatga |
5767719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 13470728 - 13470782
Alignment:
| Q |
157 |
acttggaacgaactttgatcttcccgacctggaggtgttgaacttgacaaataca |
211 |
Q |
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|||||||| |||||||| | ||||| | |||||||||||||||||| |||||||| |
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| T |
13470728 |
acttggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaataca |
13470782 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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