View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_52 (Length: 252)
Name: NF1339_low_52
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_52 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 14003386 - 14003627
Alignment:
| Q |
1 |
tggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgagagcaaagaaagtggaaactctgcgcaagcgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
14003386 |
tggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgagagcaaagaaagtggaaactgtgagcaagcgaca |
14003485 |
T |
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| Q |
101 |
attaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003486 |
attaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcagcacaatgatcattcaaaaaatcagcatattgaagatccaaatgttgg |
14003585 |
T |
|
| Q |
201 |
atacgtttcgacttagataacaaaaatgagattccagaataa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003586 |
atacgtttcgacttagataacaaaaatgagattccagaataa |
14003627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5767418 - 5767177
Alignment:
| Q |
1 |
tggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgagagcaaagaaagtggaaactctgcgcaagcgaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
5767418 |
tggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaatgagagcaaagaaagtggaaactgtgagcaagcgaca |
5767319 |
T |
|
| Q |
101 |
attaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttgg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5767318 |
attaccaaggttgagagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagtatattgaagatccaaatgttgg |
5767219 |
T |
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| Q |
201 |
atacgtttcgacttagataacaaaaatgagattccagaataa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767218 |
atacgtttcgacttagataacaaaaatgagattccagaataa |
5767177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 17627655 - 17627610
Alignment:
| Q |
159 |
tgatcattcaaaaaatcagcatattgaagatccaaatgttggatac |
204 |
Q |
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| T |
17627655 |
tgattattcaaaaaataagcatactgaagatccaaatgttggatac |
17627610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 19468138 - 19468064
Alignment:
| Q |
125 |
atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg |
199 |
Q |
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| T |
19468138 |
atcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttg |
19468064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 390 - 460
Alignment:
| Q |
129 |
ccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttg |
199 |
Q |
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| T |
390 |
ccaagaaacaaagacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgttg |
460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 547382 - 547460
Alignment:
| Q |
125 |
atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggata |
203 |
Q |
| |
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||||||||||||||||||||| ||| |||| |||| | |||||||| |||||| ||||||||| |||||||||||| |
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| T |
547382 |
atcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgttggata |
547460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 55908376 - 55908278
Alignment:
| Q |
107 |
aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg |
205 |
Q |
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|||||| ||||| | || |||||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||||||||||||||| ||||| |
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| T |
55908376 |
aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg |
55908278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 1037312 - 1037214
Alignment:
| Q |
107 |
aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgttggatacg |
205 |
Q |
| |
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|||||| ||||| | || |||||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||||||||||||||| ||||| |
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| T |
1037312 |
aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg |
1037214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 38267213 - 38267105
Alignment:
| Q |
98 |
acaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt |
197 |
Q |
| |
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||||| || |||||| ||||| | ||||| | |||||||||||||||||| |||||| |||||| | | |||||||| | |||||| ||||||||| |
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| T |
38267213 |
acaataactaaggtttatagacaccagatgaggaagaaacaaagacaactcggcaacatggtgatcagtgagaaaatcagtttcttgaaggtccaaatgt |
38267114 |
T |
|
| Q |
198 |
tggatacgt |
206 |
Q |
| |
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|| |||||| |
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| T |
38267113 |
tgtatacgt |
38267105 |
T |
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