View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_53 (Length: 251)
Name: NF1339_low_53
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_53 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 9412941 - 9413176
Alignment:
| Q |
16 |
atgagaaaggttgggattaggacccctcacatatacggtttgtttgccaatcaggctggtgggtatcaaaaggttggattcagaaaaagagatatgtata |
115 |
Q |
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| T |
9412941 |
atgagaaaggttgggattaggacccctcacatatacggtttgtttgccaatcaggctggtgggtatcaaaaggttggattcagaaaaagagatatgtata |
9413040 |
T |
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| Q |
116 |
atcagttagagaggcaaagacgatctaacatttcagatgcaagtgatgcccttggatttctcgaatcaatgagatctactgatgataagattttctggaa |
215 |
Q |
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| T |
9413041 |
atcagttagagaggcaaagacgatctaacatttcagatgcaagtgatgcccttggatttctcgaatcaatgggatctactgatgataagattttctggaa |
9413140 |
T |
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| Q |
216 |
gcatactgtagatgaagatggaagattggaaaagtt |
251 |
Q |
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| T |
9413141 |
gcatactgtagatgaagatggaagattggaaaagtt |
9413176 |
T |
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