View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_6 (Length: 495)
Name: NF1339_low_6
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 48 - 166
Target Start/End: Complemental strand, 36962814 - 36962696
Alignment:
| Q |
48 |
tcacaatcctccctcatagataaatattaatagaatatgtgataagagaaataacatgttccaaagtgtaaaataacattaaaaaatcaccactatataa |
147 |
Q |
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| T |
36962814 |
tcacaatcctccctcatagataaatattaatagaatatgtgataagagaaataacatgtgcgaaagtgtaaaataagattaaaaaatcaccactatataa |
36962715 |
T |
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| Q |
148 |
tatacatgggaaaatataa |
166 |
Q |
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| T |
36962714 |
tatacatgggaaaatataa |
36962696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 396
Target Start/End: Complemental strand, 36945170 - 36945084
Alignment:
| Q |
308 |
ttaataaatcgattactacaattaaagaacgatacttttctctattcacaatacaaatatatatcctccctttcttgattaggatgatt |
396 |
Q |
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| T |
36945170 |
ttaataaatcgattactacaattaaagaacaatacttttctc--ttgacaataaaaatatatatcctccatttcttgattaggacgatt |
36945084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 36945384 - 36945294
Alignment:
| Q |
220 |
attgacaatccaaaattgtctgatctgcttcaagctttctcagcaaatctgct---ttcccttggagtattgggtgccagagaccttcaaa |
307 |
Q |
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| T |
36945384 |
attgacaatccaaaattgtttgaactgcttcaagctttctcagcaaatatgcttgcttcccttggtgtatttggtgccagagaccttcaaa |
36945294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 313 - 396
Target Start/End: Complemental strand, 36933666 - 36933583
Alignment:
| Q |
313 |
aaatcgattactacaattaaagaacgatacttttctctattcacaatacaaatatatatcctccctttcttgattaggatgatt |
396 |
Q |
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| T |
36933666 |
aaatctattactacaattaaagaacaattcttttccctattcgcaataaaaatatatatcctccctttcttgattaggacgatt |
36933583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 36945555 - 36945472
Alignment:
| Q |
50 |
acaatcctccctcatagataaatattaatagaatatgtgataagagaaataacatgttccaaagtgtaaaataacattaaaaaa |
133 |
Q |
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| T |
36945555 |
acaatcctcattcatgggtaaatattaatagaatacgtgatgagagaaataacatgtgcaaaagtgtaaaataatattaaaaaa |
36945472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 36962639 - 36962595
Alignment:
| Q |
353 |
tcacaatacaaatatatatcctccctttcttgattaggatgattt |
397 |
Q |
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| T |
36962639 |
tcacaatagaaatatatatcctccctttcttgattaggacgattt |
36962595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 371
Target Start/End: Original strand, 12495871 - 12495921
Alignment:
| Q |
321 |
tactacaattaaagaacgatacttttctctattcacaatacaaatatatat |
371 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| ||| |||||| |
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| T |
12495871 |
tactacaattaaagaacaatacttttctctattgacaataaaaaaatatat |
12495921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 12495928 - 12495960
Alignment:
| Q |
364 |
atatatatcctccctttcttgattaggatgatt |
396 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
12495928 |
atatatatcctccctttcttgattaggacgatt |
12495960 |
T |
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