View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_63 (Length: 216)
Name: NF1339_low_63
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 6885943 - 6885817
Alignment:
| Q |
1 |
cttaggtgaattgttcatcaagaaaatgcctcttgtaagctacatatatgctgcctccaagcaaattagtgctgcaatatcaccgggtatgtatattttt |
100 |
Q |
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| T |
6885943 |
cttaggtgaattgttcatcaagaaaatgcctcttgtaagctacatatatgctgcctccaagcaaattagtgctgcaatatcaccgggtatgtatattttt |
6885844 |
T |
|
| Q |
101 |
taaatgtattctcctaacttattatat |
127 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6885843 |
taaatgtattctcctaacttattatat |
6885817 |
T |
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