View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1339_low_7 (Length: 490)
Name: NF1339_low_7
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 95 - 477
Target Start/End: Complemental strand, 32312957 - 32312577
Alignment:
| Q |
95 |
ctatgaaaaattatattacattttttcgtcattttctaatttgtatctcactttctttcggaatattacacatcacaacaatgttggaatctgtgtggtt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32312957 |
ctatgaaaaattatattacattttttcgtcattttctaatttgcatctcactttctttcggaatattacacatcacaacaatgttggaatctgtgtggtt |
32312858 |
T |
|
| Q |
195 |
tcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcatatacaagaagtgcaccaagtgccccacgatagtaagcactt |
294 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32312857 |
tcgcagttctttcagccatgtatcgacgttctcaaatgttgcatggcgtgtaacatcatatacaagaagtgcaccaactgccccacgatagtaagcactt |
32312758 |
T |
|
| Q |
295 |
gtgatggcgcgatacctgcagatagaaacaatgtgaattattaacatgagtttcatagtaaagccagttacaaaataataacaatggaccgtaaagcaag |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32312757 |
gtgatggcgcgatacctgcagatagaaaca--gtgaattattaacatgagtttcatagtaaagccagttacaaaataataacaatggaccgtaaagcaag |
32312660 |
T |
|
| Q |
395 |
caacaatatagtattgtgttcattcaggtggttagaagaccaaactacagatatcaagacaccgcttattgtactttctgcct |
477 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32312659 |
caacaatgtagtattgtgttcattcaggtggttagaagaccaaactacagatatcaagacaccgcttattgtactttctgcct |
32312577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 95 - 477
Target Start/End: Original strand, 32788213 - 32788620
Alignment:
| Q |
95 |
ctatgaaaaattatattacatttttt--cgtcattttctaatttgtatctcactttctttcggaatattacacatcacaacaatgttggaatctgtgtgg |
192 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32788213 |
ctatgaaaaattaaattacattttttttcgtcattttctaatttgtatctcactctctttcggaatattacacatcacaacaatgttggaatctgtgtgg |
32788312 |
T |
|
| Q |
193 |
tttcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcatatacaagaagtgcaccaagtgccccacgatagtaagcac |
292 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
32788313 |
tttcgcagttctttcagccatccgtcgacgttctcaaatgttgcatggcgtgtaacatcatatacaagaagtgcaccaactgccccatgatagtaagcac |
32788412 |
T |
|
| Q |
293 |
ttgtgatggcgcgatacctgcagatagaaacaatgtgaattattaacatgagtttcatagtaaagccag--------------------ttacaaa---a |
369 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||| | |
|
|
| T |
32788413 |
ttgtgatgactcgatacctgcagatagaaacaatgtgaattattcacatgagtttcttagtaaaggcagttacaaaaattggctgcttgttacaaatcaa |
32788512 |
T |
|
| Q |
370 |
taataacaatggaccgtaaagcaagcaacaatatagtattgtgttcattcaggtggttagaagaccaaactacagatatcaagacaccgcttattgtact |
469 |
Q |
| |
|
| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32788513 |
tcataacaatggagcgtaaagcaagcaacaatgtagtattgtgttcattcaggtggttagaagaccaaactatagatatcaagacaccgcttattgtact |
32788612 |
T |
|
| Q |
470 |
ttctgcct |
477 |
Q |
| |
|
|||||||| |
|
|
| T |
32788613 |
ttctgcct |
32788620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 165 - 369
Target Start/End: Complemental strand, 31792518 - 31792314
Alignment:
| Q |
165 |
catcacaacaatgttggaatctgtgtggtttcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcatatacaagaagt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| | || ||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31792518 |
catcacaacaatgttggaatctgtgtggtttcgcagttctttcaaccatctgtcaacgttttcaaatgttgcatggcgtgtaacatcatatacaagaagt |
31792419 |
T |
|
| Q |
265 |
gcaccaagtgccccacgatagtaagcacttgtgatggcgcgatacctgcagatagaaacaatgtgaattattaacatgagtttcatagtaaagccagtta |
364 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| |
|
|
| T |
31792418 |
gcaccaactgccccacgatagtaagcacttgtgatggcgcgatacctgcagatagaaacaatgtgaattataaacatgagtttcatagtaaagtcaatta |
31792319 |
T |
|
| Q |
365 |
caaaa |
369 |
Q |
| |
|
||||| |
|
|
| T |
31792318 |
caaaa |
31792314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 31792922 - 31792849
Alignment:
| Q |
94 |
actatgaaaaattatattacattttttcgtcattttctaatttgtatctcactttctttcggaatattacacat |
167 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
31792922 |
actatgaaaaattaaattacattttttcgtcttcttctaatttgtatctctctcactttcggaatattacacat |
31792849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 31792272 - 31792208
Alignment:
| Q |
392 |
aagcaacaatatagtattgtgttcattcaggtggttagaagaccaaactacagatatcaagacac |
456 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31792272 |
aagcaacaatgcagcattgtgttcattcaggtggttagaagacaaaactacagatatcaagacac |
31792208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 4372986 - 4373075
Alignment:
| Q |
165 |
catcacaacaatgttggaatctgtgtggtttcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcata |
254 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || ||| || |||| ||| | || ||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
4372986 |
catcaccacaatgttggcatctgtgtggtctctcagctccttcaaccacctctccacgttttcaaatgtaacatgacgtgtaacatcata |
4373075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 296
Target Start/End: Complemental strand, 34701602 - 34701471
Alignment:
| Q |
165 |
catcacaacaatgttggaatctgtgtggtttcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcatatacaagaagt |
264 |
Q |
| |
|
|||||| || ||||||| ||||||||| | || ||| ||||| |||||| | || || || ||||||||| ||||||| ||||||||||| || | | |
|
|
| T |
34701602 |
catcacgacgatgttggcatctgtgtgatctctcagctcttttagccatctctccacattttcaaatgtaacatggcgggtaacatcatagactaacaaa |
34701503 |
T |
|
| Q |
265 |
gcaccaagtgccccacgatagtaagcacttgt |
296 |
Q |
| |
|
|| |||| || |||||||||||||||||||| |
|
|
| T |
34701502 |
gcgccaacagctccacgatagtaagcacttgt |
34701471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University