View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1339_low_8 (Length: 460)

Name: NF1339_low_8
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1339_low_8
NF1339_low_8
[»] chr6 (3 HSPs)
chr6 (102-296)||(5312870-5313064)
chr6 (330-445)||(5313098-5313213)
chr6 (198-279)||(16718962-16719043)
[»] chr3 (5 HSPs)
chr3 (102-296)||(54754193-54754387)
chr3 (102-244)||(29515812-29515951)
chr3 (330-445)||(54754421-54754536)
chr3 (159-278)||(53344910-53345029)
chr3 (203-278)||(31629341-31629416)
[»] scaffold0928 (2 HSPs)
scaffold0928 (102-296)||(3138-3332)
scaffold0928 (365-445)||(3425-3505)
[»] chr7 (2 HSPs)
chr7 (102-278)||(9147102-9147278)
chr7 (198-279)||(36611462-36611543)
[»] chr5 (3 HSPs)
chr5 (198-278)||(24565573-24565653)
chr5 (198-278)||(24606609-24606689)
chr5 (201-279)||(40372131-40372209)
[»] chr1 (2 HSPs)
chr1 (146-278)||(26240787-26240919)
chr1 (200-278)||(12449282-12449360)
[»] chr4 (2 HSPs)
chr4 (180-264)||(18363603-18363687)
chr4 (180-264)||(36599241-36599325)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 102 - 296
Target Start/End: Original strand, 5312870 - 5313064
Alignment:
Q  102 agttagtagtcatcaataatgaccatgggatgagatagaggcaggattgtatgcgaaaatgtatacatgtttacattattattttcaatcaagatcaacc 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5312870 agttagtagtcaccaataatgaccatgggatgagatagaggcaggattgtatgcggaaatgtatacatgtttacattattattttcaatcaagatcaacc 5312969  T
Q  202 gttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccaccactaaattataatctcag 296  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| || |||||||    
T  5312970 gttaattaaatttaagggtattttgttcatgttccaccggtgaaggacctagttgaaccctcatcttaaaatccactactaaatgatgatctcag 5313064  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 330 - 445
Target Start/End: Original strand, 5313098 - 5313213
Alignment:
Q  330 ctatctttcactcatcaaccaaataaagtataaacaagagttggactaaattaaccccattttcagagactaaaaaatatttttattttctaagggacta 429  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  5313098 ctatctttcactcatcaagcaaataaagtataaacaagagttggactaggttaaccccattttcagggactaaaaaatatttttattttctatgggacta 5313197  T
Q  430 cattgtatcttatcat 445  Q
    ||||| ||||||||||    
T  5313198 cattggatcttatcat 5313213  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 16718962 - 16719043
Alignment:
Q  198 aaccgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccacca 279  Q
    |||| |||||||||| ||| | ||||||||||||| ||||||||||||| || || |||| || ||| | || |||||||||    
T  16718962 aacctttaattaaatctaacgatattttgttcatggtccaccggtgagggacttaattgatccgtcaccctagaatccacca 16719043  T

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Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 102 - 296
Target Start/End: Original strand, 54754193 - 54754387
Alignment:
Q  102 agttagtagtcatcaataatgaccatgggatgagatagaggcaggattgtatgcgaaaatgtatacatgtttacattattattttcaatcaagatcaacc 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54754193 agttagtagtcaccaataatgaccatgggatgagatagaggcaggattgtatgcggaaatgtatacatgtttacattattattttcaatcaagatcaacc 54754292  T
Q  202 gttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccaccactaaattataatctcag 296  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| || |||||||    
T  54754293 gttaattaaatttaagggtattttgttcatgttccaccggtgaaggacctagttgaaccctcatcttaaaatccactactaaatgatgatctcag 54754387  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 29515951 - 29515812
Alignment:
Q  102 agttagtagtcatcaataatgaccatgggatgagatagaggcaggattgtatgcgaaaatgtatacatgtttacattattattttcaatcaagatcaacc 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29515951 agttagtagtcaccaataatgaccatgggatgagatagaggcaggattgtatgcggaaatgtatacatgtttacattattattttcaatcaagatcaacc 29515852  T
Q  202 gttaattaaatttaagggtattttgttcatgttccaccggtga 244  Q
    |||||||   | |||||||||||||||||||||||||||||||    
T  29515851 gttaatt---tctaagggtattttgttcatgttccaccggtga 29515812  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 330 - 445
Target Start/End: Original strand, 54754421 - 54754536
Alignment:
Q  330 ctatctttcactcatcaaccaaataaagtataaacaagagttggactaaattaaccccattttcagagactaaaaaatatttttattttctaagggacta 429  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  54754421 ctatctttcactcatcaagcaaataaagtataaacaagagttggactaggttaaccccattttcagggactaaaaaatatttttattttctatgggacta 54754520  T
Q  430 cattgtatcttatcat 445  Q
    ||||| ||||||||||    
T  54754521 cattggatcttatcat 54754536  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 53345029 - 53344910
Alignment:
Q  159 aatgtatacatgtttacattattattttcaatcaagatcaaccgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||| ||||||| | |||||||||    
T  53345029 aatgtatacatgtttacattattattttcaatcaagatcaaccgttaattatatctaagggcattatgttcatgttccactggtgagggatctagttgaa 53344930  T
Q  259 ccctcatcttaaaatccacc 278  Q
    ||||||||||| ||||||||    
T  53344929 ccctcatcttagaatccacc 53344910  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 31629416 - 31629341
Alignment:
Q  203 ttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccacc 278  Q
    ||||||||||| || ||||||||||||||| ||||| |||||||||| || |||||| |||| |||||||| ||||    
T  31629416 ttaattaaattcaatggtattttgttcatgatccactggtgaggaacttaattgaacactcaccttaaaattcacc 31629341  T

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Target: scaffold0928 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: scaffold0928
Description:

Target: scaffold0928; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 102 - 296
Target Start/End: Original strand, 3138 - 3332
Alignment:
Q  102 agttagtagtcatcaataatgaccatgggatgagatagaggcaggattgtatgcgaaaatgtatacatgtttacattattattttcaatcaagatcaacc 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3138 agttagtagtcaccaataatgaccatgggatgagatagaggcaggattgtatgcggaaatgtatacatgtttacattattattttcaatcaagatcaacc 3237  T
Q  202 gttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccaccactaaattataatctcag 296  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||| || |||||||    
T  3238 gttaattaaatttaagggtattttgctcatgttccaccgatgagggacctagttgaaccatcatcttaaaatcccccactaaatgatgatctcag 3332  T

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Target: scaffold0928; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 3425 - 3505
Alignment:
Q  365 aagagttggactaaattaaccccattttcagagactaaaaaatatttttattttctaagggactacattgtatcttatcat 445  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3425 aagagttggactaagttaaccccattttcagggactaaaaaatatttttattttctaagggactacattggatcttatcat 3505  T

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Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 102 - 278
Target Start/End: Complemental strand, 9147278 - 9147102
Alignment:
Q  102 agttagtagtcatcaataatgaccatgggatgagatagaggcaggattgtatgcgaaaatgtatacatgtttacattattattttcaatcaagatcaacc 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  9147278 agttagtagtcaccaataatgaccatgggatgagatagaggcaggattgtatgcggaaatgtatacatgtttacattattatttttaatcaagatcaacc 9147179  T
Q  202 gttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccacc 278  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  9147178 gttaattaaatctaagggtattttgttcatgttccaccagtgagggacctagttgaaccctcatcttagaatccacc 9147102  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 36611462 - 36611543
Alignment:
Q  198 aaccgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccacca 279  Q
    |||| |||||||||| ||| ||||||||||||||| ||||||||||||  |  || ||||||||||| | || |||||||||    
T  36611462 aaccattaattaaatctaatggtattttgttcatggtccaccggtgagagatttaattgaaccctcaccctagaatccacca 36611543  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 24565653 - 24565573
Alignment:
Q  198 aaccgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccacc 278  Q
    |||| |||||||||| ||| ||||||||||||||| ||||||||||||| |  || ||||||||||| | || ||||||||    
T  24565653 aaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 24606689 - 24606609
Alignment:
Q  198 aaccgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccacc 278  Q
    |||| |||||||||| ||| ||||||||||||||| ||||||||||||| |  || ||||||||||| | || ||||||||    
T  24606689 aaccattaattaaatctaatggtattttgttcatggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 40372131 - 40372209
Alignment:
Q  201 cgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccacca 279  Q
    |||||||||||| ||| | |||||| |||||  |||||||||||||||| || ||||||||||| | || |||||||||    
T  40372131 cgttaattaaatctaacgttattttattcatagtccaccggtgaggaacttaattgaaccctcaccctagaatccacca 40372209  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 26240787 - 26240919
Alignment:
Q  146 gattgtatgcgaaaatgtatacatgtttacattattattttcaatcaagatcaaccgttaattaaatttaagggtattttgttcatgttccaccggtgag 245  Q
    |||||||||  ||||||| || |||||  || ||||||||||||| ||  |||||| || ||| |||  || |||||||| |||||| ||||||||||||    
T  26240787 gattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtattttcttcatggtccaccggtgag 26240886  T
Q  246 gaacctagttgaaccctcatcttaaaatccacc 278  Q
    | || || ||||||||||| | || ||||||||    
T  26240887 ggacttaattgaaccctcaccctagaatccacc 26240919  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 12449282 - 12449360
Alignment:
Q  200 ccgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctcatcttaaaatccacc 278  Q
    ||||| ||||||||||| |||||||||||  || ||||||||||||| || || |||| |||||| | |||||||||||    
T  12449282 ccgttcattaaatttaatggtattttgtttgtggtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 18363603 - 18363687
Alignment:
Q  180 ttattttcaatcaagatcaaccgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctca 264  Q
    ||||||||||| ||  |||||| || ||| |||  || |||||||| ||| || |||||||||||||||| || |||||||||||    
T  18363603 ttattttcaataaatctcaaccattgattcaatcgaatggtattttcttcgtggtccaccggtgaggaacttaattgaaccctca 18363687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 36599325 - 36599241
Alignment:
Q  180 ttattttcaatcaagatcaaccgttaattaaatttaagggtattttgttcatgttccaccggtgaggaacctagttgaaccctca 264  Q
    ||||||||||| ||  |||||| || ||| |||  || |||||||| ||| || |||||||||||||||| || |||||||||||    
T  36599325 ttattttcaataaatctcaaccattgattcaatcgaatggtattttcttcgtggtccaccggtgaggaacttaattgaaccctca 36599241  T

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