View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1339_low_9 (Length: 446)
Name: NF1339_low_9
Description: NF1339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1339_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 53660908 - 53661278
Alignment:
| Q |
1 |
aactctatttttaaagaacttgaaacttattttaatactttgtggtaataaacagagaggatactcaatcacttact----atacattattgactccaaa |
96 |
Q |
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| T |
53660908 |
aactctatttttaaagaacttgaaacttattttaatactttgtggtaataaacagagaggatactcaatcacttacttactatacattattgactccaaa |
53661007 |
T |
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| Q |
97 |
agttaagtaaatctattttctttccatcttctgccaaaactcaatcactt---agtaacttgaatcgccaatcaactttagtttccatatataatcagat |
193 |
Q |
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| T |
53661008 |
agttaagtaaatctattttctttccatcttctgccaaaactcaatcacttcttagtaacttgtatcgccaatcaactttagtttccatatataatcagat |
53661107 |
T |
|
| Q |
194 |
agaggacatgcaataacttatccaacaggaattccatcgacaaatataaacagacagcatcaactaaaatacaataagccagtaaaatttaaaagtaatc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53661108 |
agaggacatgcaataacttatccaacaggaattccattgacaaatataaaccgacagcatcaactaaaatacaataagccagtaaaatttaaaagtaatc |
53661207 |
T |
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| Q |
294 |
aatgtgagcttactccagtcttatctatcaaaagattagctgacttgaggtcccggtgtatgatattattc |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53661208 |
aatgtgagcttactccagtcttatctatcaaaagattagctgacttgaggtcccggtgtatgatatcattc |
53661278 |
T |
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