View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13401_low_1 (Length: 376)
Name: NF13401_low_1
Description: NF13401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13401_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 3 - 359
Target Start/End: Complemental strand, 23420335 - 23419987
Alignment:
| Q |
3 |
atcaatggttgtttgcttaagaccgttaaatctagatatcataaggaacttttcaacgcacatttgcagcaatggttggagatgagtatggatacggcat |
102 |
Q |
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| T |
23420335 |
atcaatggttgtttgcttaagaccgttaattctagatatcataaggaacttttcaacgcagatttgcagcaatggttggagatgagtatggatacggcgt |
23420236 |
T |
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| Q |
103 |
tgagtgagcgggaggtctgaaatcggactggcttttgggagacgacatgtcatactttgtggaattggaggaacagaatgatgcatgatgaggattttgt |
202 |
Q |
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| T |
23420235 |
tgagtgagcgggaggtctgaaatcggactggcttttgggagacgacatgtcatacgttgtggaattggaggaacagaacgatgcatgatgaggattttgt |
23420136 |
T |
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| Q |
203 |
gtcacctagtaatccttggttggaaattaacaggcttgttaattgtctcgtggctcagtggctggtgctaaaactgcttccatgcaaaacactacaatta |
302 |
Q |
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| T |
23420135 |
gtcacctagtaatccttgactggaaattaacaggcttgttaattgtctcgt--------ggctggtgctaaaactgcttccatgcaaaacactacaatta |
23420044 |
T |
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| Q |
303 |
caaatgacaattttggaaaatatcgactggcatggctggatccgtttgatcacggtg |
359 |
Q |
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| T |
23420043 |
caaatgacaattttggaaaatatcgactggcatggctggatccgtttgatcacggtg |
23419987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 5 - 249
Target Start/End: Original strand, 23882965 - 23883209
Alignment:
| Q |
5 |
caatggttgtttgcttaagaccgttaaatctagatatcataaggaacttttcaacgcacatttgcagcaatggttggagatgagtatggatacggcattg |
104 |
Q |
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| T |
23882965 |
caatggttgtttgcttaggactgttaattttagatatcacaaggaacttttcaacgcagatttgcagcaatggttggatatgagtatggatatagtgttg |
23883064 |
T |
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| Q |
105 |
agtgagcgggaggtctgaaatcggactggcttttgggagacgacatgtcatactttgtggaattggaggaacagaatgatgcatgatgaggattttgtgt |
204 |
Q |
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| T |
23883065 |
agtgaggggaagacccgaaattggactggtttttgggctaaggcatgtcatacttcgtggaattggaggaacagaaggatgcatgatgaggattttgtgt |
23883164 |
T |
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| Q |
205 |
cacctagtaatccttggttggaaattaacaggcttgttaattgtc |
249 |
Q |
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| T |
23883165 |
cacctagtaatccttggctggaaattagcaggcttgttaattgtc |
23883209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 23422349 - 23422274
Alignment:
| Q |
146 |
gacatgtcatactttgtggaattggaggaacagaatgatgcatgatgaggattttgtgtcacctagtaatccttgg |
221 |
Q |
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| T |
23422349 |
gacatgtcatactttgtggaattgaaggaacaaaatgatgcatgatgaggatattgtgtcgcctagtaatccttgg |
23422274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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