View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13401_low_2 (Length: 244)
Name: NF13401_low_2
Description: NF13401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13401_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 29934445 - 29934235
Alignment:
| Q |
17 |
cacaatatctgaatgcaattgaaagtggtaaagttgaaaatgtacctgctcctgctattgctattgattattggagacttccaaacgatgcaactcttaa |
116 |
Q |
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| T |
29934445 |
cacaatatctgaatgcaattgaaagtggtaaagttgaaaatgtacctgctcctgctattgctattgattattggagacttccaaatgatgcaactcttaa |
29934346 |
T |
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| Q |
117 |
ggatgttgttactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttctgtaagtctgccatattttcattataattgtgataaa |
216 |
Q |
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| T |
29934345 |
ggatgttgtcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttctgtaagtctgccatattttcattataattgtgataaa |
29934246 |
T |
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| Q |
217 |
tatgttttcat |
227 |
Q |
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||||||||||| |
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| T |
29934245 |
tatgttttcat |
29934235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 29931721 - 29931559
Alignment:
| Q |
17 |
cacaatatctgaatgcaattgaaagtggtaaagttgaaaatgtacctgctcctgctattgctattgattattggagacttccaaacgatgcaactcttaa |
116 |
Q |
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||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
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| T |
29931721 |
cacaacatttgaatgcaattgagagtggtaaagttgaaaatgtacctgctcctgctattgcaattgattattggagacttcctaaggatgcaactcttaa |
29931622 |
T |
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| Q |
117 |
ggatgttgttactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttc |
179 |
Q |
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| T |
29931621 |
ggatgttatcactgttattcgtgctgatgaggctcatcatagggatgtcaatcactttgcttc |
29931559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 37469718 - 37469832
Alignment:
| Q |
50 |
ttgaaaatgtacctgctcctgctattgctattgattattggagacttccaaacgatgcaactcttaaggatgttgttactgttattcgtgctgatgaggc |
149 |
Q |
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|||||||||| ||||||||||| ||||| || || |||||||| ||||| || ||||| | | || |||||| | || || ||||||||||| ||||| |
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| T |
37469718 |
ttgaaaatgttcctgctcctgccattgcaatagactattggaggcttcccaaggatgccaaattgaaagatgttataacagtcattcgtgctgacgaggc |
37469817 |
T |
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| Q |
150 |
tcatcatagggatgt |
164 |
Q |
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||| ||| ||||||| |
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| T |
37469818 |
tcaccatcgggatgt |
37469832 |
T |
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