View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13402_high_10 (Length: 398)
Name: NF13402_high_10
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_10 |
 | |
|
| [»] scaffold0129 (3 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 22 - 377
Target Start/End: Original strand, 13473298 - 13473653
Alignment:
| Q |
22 |
catcatcagatatatcacaatacaaacgtcgaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaagactaaatgcattagtgacatt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13473298 |
catcatcagatatatcacaatacaaacgtcaaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaagactaaatgcattagtgacatt |
13473397 |
T |
|
| Q |
122 |
agatagacactcattaaggctagggtaaacgaccttaatttccttagtagccgggttccataatactacatttctatgatcgagacaattatagaaacaa |
221 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13473398 |
agatagacactcgttaaggctaggagaaacgaccttaatttccttagtagccgggttccataatactacatttctatgatcgagacaattatagaaacaa |
13473497 |
T |
|
| Q |
222 |
ataatgccattaatagcagaacctaaaatatgaggaagaaaattatcacttggtagatgatcatatggcggtggtggatctaatctaaccttattctcaa |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13473498 |
ataatgccattaatagcagaacctaaaatatgaagaagaaaattgtcacttggtagatgatcatatggcggtggtggatctaatctaaccttattctcaa |
13473597 |
T |
|
| Q |
322 |
acctctcacctgaaagcatatacaacatactcggaaccaaaaacatattgatgatg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
13473598 |
acctctcacctgaaagcatatacaacatactcgaaaccaaaaacatattgaagatg |
13473653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 26606709 - 26606657
Alignment:
| Q |
49 |
gtcgaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaaga |
101 |
Q |
| |
|
||||||| || ||| |||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
26606709 |
gtcgaatcaccttgtaatcatctctaacagaatcataaccaaatccatgaaga |
26606657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 27735998 - 27736033
Alignment:
| Q |
64 |
aatcatctctaacatgatcataaccaaatgcatgaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27735998 |
aatcatctctaacatgatcataaccaaatccatgaa |
27736033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 9801 - 9764
Alignment:
| Q |
312 |
ttattctcaaacctctcacctgaaagcatatacaacat |
349 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
9801 |
ttattctcaaacctctcaccagaaagcaaatacaacat |
9764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 17601 - 17650
Alignment:
| Q |
50 |
tcgaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaa |
99 |
Q |
| |
|
||||||||| ||| | |||||||||||||| |||||||||||| |||||| |
|
|
| T |
17601 |
tcgaatgactttgtagtcatctctaacatggtcataaccaaatccatgaa |
17650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 33997 - 34046
Alignment:
| Q |
50 |
tcgaatgacattgaaatcatctctaacatgatcataaccaaatgcatgaa |
99 |
Q |
| |
|
||||||||| ||| | |||||||||||||| |||||||||||| |||||| |
|
|
| T |
33997 |
tcgaatgaccttgtagtcatctctaacatgctcataaccaaatccatgaa |
34046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University