View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_13 (Length: 383)
Name: NF13402_high_13
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 25 - 355
Target Start/End: Original strand, 44925766 - 44926096
Alignment:
| Q |
25 |
catcaagaatgttgagaatgaccttcgacaatatcctaggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggt |
124 |
Q |
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| T |
44925766 |
catcaagaatgttgagaatgactttcgacaatatcctaggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggt |
44925865 |
T |
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| Q |
125 |
tcccggatttatgattccgaagataaatgtgtagaagttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagt |
224 |
Q |
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| T |
44925866 |
tcccggatttatgattccgaagataaatgtgtagaagttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagt |
44925965 |
T |
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| Q |
225 |
ctcgtctcaaaatttggaaagtccaactagaagaggccatgacaaagactcagttgaaacacatttctcaagtgcttgcagagaatgacattggttgtga |
324 |
Q |
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| T |
44925966 |
ctcgtctcaaaatttggaaagtccaactagaagaggccatgacaaagactcagttgaaacacatttctcaagtgcttgcagagaataacattggttgtga |
44926065 |
T |
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| Q |
325 |
tgacttgaatactatcggtcattctgacact |
355 |
Q |
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| T |
44926066 |
tgacttgaatactatcggtcattctgacact |
44926096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 62 - 283
Target Start/End: Original strand, 44933960 - 44934181
Alignment:
| Q |
62 |
aggatgtacaatttgttccatgagctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatgtgtagaag |
161 |
Q |
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| T |
44933960 |
aggatgtacagattgttccaaaagacattaaataaactttcaggatcagtgttgatactcggttcccggccttatgatttaaaatataactgtaccaaag |
44934059 |
T |
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| Q |
162 |
ttgatgaaaaactcactatgttattcccttgcaacattgagatcaaaccgcctcaagatgagtctcgtctcaaaatttggaaagtccaactagaagaggc |
261 |
Q |
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| T |
44934060 |
tcaatgaaaaactcactatgttattcccttacaacatagagatcacaccacctcaagatgagactcatctcaaaatctggaaaagccaactaaaaaaggc |
44934159 |
T |
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| Q |
262 |
catgacaaagactcagttgaaa |
283 |
Q |
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| T |
44934160 |
catgaaaaagactcacttgaaa |
44934181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 266
Target Start/End: Original strand, 32199384 - 32199565
Alignment:
| Q |
86 |
ctattaaataaactttcagggtcagttttgatacttggttcccggatttatgattccgaagataaatgtgtagaagttgatgaaaaactcactatgttat |
185 |
Q |
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| T |
32199384 |
ctattaaagaaactttcaggatcagtgttgatcctcggttcccagatttatgatttagaagataattgtaaaaaagttgatgaaaagcttgccatgttat |
32199483 |
T |
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| Q |
186 |
tcccttgcaacattgagatcaaaccgcctcaagat-gagtctcgtctcaaaatttggaaagtccaactagaagaggccatga |
266 |
Q |
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| T |
32199484 |
tcccttgcaacgttgagatcaaactgccttcagataaaaactcgtctcaaaatctggaaagcccaattataagaggctatga |
32199565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 32197004 - 32197091
Alignment:
| Q |
180 |
tgttattcccttgcaacattgagatcaaaccgcctcaaga-tgagtctcgtctcaaaatttggaaagtccaactagaagaggccatga |
266 |
Q |
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| T |
32197004 |
tgttattcccttgcaacgttgagatcaaactgccttaagattaaaactcgtctcaaaatctggaaagcccaattagaagaggctatga |
32197091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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