View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_19 (Length: 355)
Name: NF13402_high_19
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 120 - 305
Target Start/End: Original strand, 52912629 - 52912823
Alignment:
| Q |
120 |
ctgcagcgaccaatcatttgtctaatt----gttttcaaacaagaacaaaaacatcaccttc-----tcttctctaagaggagaagattgtccaacgcgt |
210 |
Q |
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| T |
52912629 |
ctgcaacgaccaatcatttgtctaattaattgttttcaaacaagaacaaaaacatcaccttctcttctcttctctaagaggagaagattgtccaacgcgt |
52912728 |
T |
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| Q |
211 |
gcatgcacttgcgtgtgagagaagagaagtattatttctccgtcacccaatcaatatcctcacctcatctgtatttaaagcctagctagctagct |
305 |
Q |
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| T |
52912729 |
gcatgcacttgcgtgtgagagaagagaagtattatttcttcgtcacccaatcaatatcctcacctcatctgtatttaaagcctagctagctagct |
52912823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 52912550 - 52912584
Alignment:
| Q |
1 |
caacttggaaattgctttagtttttaaaacttaaa |
35 |
Q |
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| T |
52912550 |
caacctggaaattgctttagtttttaaaacttaaa |
52912584 |
T |
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