View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_1_N (Length: 610)
Name: NF13402_high_1_N
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_1_N |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 67 - 610
Target Start/End: Original strand, 8187863 - 8188402
Alignment:
| Q |
67 |
tgcagactttaatcctttgtttctaaaggaaacactttcggatgcttcatcaagtttgagttctgaaggtgatggattggatcgtaatgttgtagatagt |
166 |
Q |
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| T |
8187863 |
tgcagactttaatcctttgtttctaaaggaaacactttcagatgcttcatcaagtttgagttctgaaggtgatggattggatcgtaatgttgtagatagt |
8187962 |
T |
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| Q |
167 |
gggccatctatggatatagatttggaaaagataacggataatgagcaaatctgtagtgcagtagattctgaacatggcgaggaggaaattgttttagaag |
266 |
Q |
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| T |
8187963 |
gggccatctatggatatagatttggaaaagataacggataatgagcaaatctgtagtgcagtagattctgaacatggcgaggaggaaattgttttagaag |
8188062 |
T |
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| Q |
267 |
cggcaggtatgatatctcaattggagattgataaggagaagaagaatgacttgattagtggtactagtgatggttttaggatagaagacataagcaacac |
366 |
Q |
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| T |
8188063 |
cggcaggtatgatatctcaattggagattgataaggagaagaagaatgacttgattagtggtactagtgatggttttaggatagaagacataagcaacac |
8188162 |
T |
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| Q |
367 |
aacgaaaccccgaagcccagtgatagacatagatactgaggatgctatttgtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgag |
466 |
Q |
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| T |
8188163 |
aacgaaaccccgaagcccagtgatagacatagatactgaggatgctatttgtatgcgtactagagctcgttattcgcttgaaggtttcagtcttgatgag |
8188262 |
T |
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| Q |
467 |
cttgagacctttcttcaagagaccgatgatgaagatgatgtccatctcattgtcgtctgatgaagaagagtataaaaaatttctagcagctgtattacag |
566 |
Q |
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| T |
8188263 |
cttgagacctttcttcaagagactgatgatgaagatgatgt---tcaaaatgtcg-atgatgaagaagagtataaaaaatttctagcagctgtattacag |
8188358 |
T |
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| Q |
567 |
ggtggagaacgtgacggtctttcatctcatgaaaatgaaaacct |
610 |
Q |
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| T |
8188359 |
ggtggagaacgtgacggtctttcatctcatgaaaatgaaaacct |
8188402 |
T |
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