View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_20 (Length: 353)
Name: NF13402_high_20
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 4970439 - 4970775
Alignment:
| Q |
1 |
tctccagatttgttcttataactcaatcagatctcaattctgaaattaaattaaattagcccatgacaaactgctcccaatccatgtgtagaagagaaag |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||| |
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| T |
4970439 |
tctccagatctgttcttataactcaatcagatctcaattctgaaattaaattaaattagcccatgacaaactgctctcaatcaatgtgtagaagataaag |
4970538 |
T |
|
| Q |
101 |
aagaaatggtatatggacaccattttgaggaggattcaaattgataccacgacaaactgcaatctttatttatttatttttatgattgtttgctcccatg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4970539 |
aagaaatggtatatagacaccattttgaggaggattcaaattgataccacgacaatctgcaatctttatttattt-tttttatgattgtttgctcccatg |
4970637 |
T |
|
| Q |
201 |
aatgaaattggaatcacaaacaccaaagaacgtgattcttctactcgccaaaatcaaccttcccgttggcgcttcccgtcgccgttgtgcctttgtacat |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
4970638 |
aatgaaatcggaatcacaaacaccaaagaacgtgattcttctactcgccaaaatcaaccttcccgttggcgcttcccgtcgccgtcgggcc--tgtacat |
4970735 |
T |
|
| Q |
301 |
gtcattctgattactgtaactcttttcgcctcacaggttc |
340 |
Q |
| |
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| T |
4970736 |
gtcattctgattactataactctcttcgcctcaccggttc |
4970775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 1021376 - 1021414
Alignment:
| Q |
302 |
tcattctgattactgtaactcttttcgcctcacaggttc |
340 |
Q |
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| T |
1021376 |
tcattctgattactgtaactctcttcgcctcaccggttc |
1021414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 6345390 - 6345053
Alignment:
| Q |
1 |
tctccagatttgttcttataactcaatcagatctcaattctgaaattaaattaaattagcccatgacaaactgctcccaatcca-----tgtgtagaaga |
95 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6345390 |
tctccatatctgttcttataactcaatcagatctcaattctgaaattaaattaaattagcccatgacaaactgctcccaatccaatccatgtgtagaaga |
6345291 |
T |
|
| Q |
96 |
gaaagaagaaatggtatatggacaccattttgaggaggattcaaattgataccacgacaaactgcaatctttatttatttatttttatgattgtttgctc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
6345290 |
gaaagaagaaatggtatatggacaccattttgaggaggattcaaattgataccacgacaaactgcaatct-------tttttttttatgattgtttgctc |
6345198 |
T |
|
| Q |
196 |
ccatgaatgaaattggaatcacaaacaccaaagaacgtgattcttctactcgccaaaatcaaccttcccgttggcgcttcccgtcgccgttgtgcctttg |
295 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||| |
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| T |
6345197 |
ccatgaatgaaatcggaatcacaaacaccaaagaacgtgattcttctactcgccaaaatcaaccttccagttgccgcttcccgtcatcgtcgtgcctttg |
6345098 |
T |
|
| Q |
296 |
tacatgtcattctgattactgtaactcttttcgcctcacaggttc |
340 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
6345097 |
tacatgtcattctgattactgtaactctcttcgcctcaccggttc |
6345053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 21978825 - 21978781
Alignment:
| Q |
67 |
caaactgctcccaatccatgtgtagaagagaaagaagaaatggta |
111 |
Q |
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| T |
21978825 |
caaactgctcccaatccatgtgtagaagagaaagaagaaatggta |
21978781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 36872529 - 36872468
Alignment:
| Q |
59 |
gcccatgacaaactg-ctcccaatccatgtgtagaagagaaagaagaaatggtatatggaca |
119 |
Q |
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||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
36872529 |
gcccatgacaaacgggctcccaatccatgtctagaagagaaagaagaaatggtatgtggaca |
36872468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 24388113 - 24388069
Alignment:
| Q |
67 |
caaactgctcccaatccatgtgtagaagagaaagaagaaatggta |
111 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24388113 |
caaactactcccaatccatgtgtagaagagaaagaagaaatggta |
24388069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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