View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_21 (Length: 350)
Name: NF13402_high_21
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 28 - 331
Target Start/End: Original strand, 3744806 - 3745109
Alignment:
| Q |
28 |
agcagaaacagcatcagtattagcattcccaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttct |
127 |
Q |
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| T |
3744806 |
agcagaaacagcatcagtattagcattctcaggaagcacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttct |
3744905 |
T |
|
| Q |
128 |
ttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatca |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744906 |
ttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatca |
3745005 |
T |
|
| Q |
228 |
cgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtgtgatga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3745006 |
cgaacacgtatgaattctgatcttccttaatatctgcaggagtagcagccattgccttggcatctctaacataggatctagttggagcattgtgtgatga |
3745105 |
T |
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| Q |
328 |
tgtc |
331 |
Q |
| |
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|||| |
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| T |
3745106 |
tgtc |
3745109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 48303046 - 48303219
Alignment:
| Q |
64 |
cacaaatttcctcataaacttaccaacccttcgttccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcaca |
163 |
Q |
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| T |
48303046 |
cacaaatttcctcataaacttaccaacccttctttccatcttcaaatattt---accaccttctttctcttcttctctcttcctttcaccgcttatcaga |
48303142 |
T |
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| Q |
164 |
agcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaacacgtatga |
240 |
Q |
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| T |
48303143 |
agcacattctcatcttcaacctgaaccttgatgtcaccagatttcaaccctggcatgtccaccacgaacacgtatga |
48303219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 10462270 - 10462162
Alignment:
| Q |
132 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
231 |
Q |
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||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| |||||||||||||| |||| ||| ||| |||| |
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| T |
10462270 |
cttcttccctcttcctctcgccggttatcacaaccactttatcatcttcaacctcaaccttgatatcaccagatttcaatcccggcaagtccatctcgaa |
10462171 |
T |
|
| Q |
232 |
cacgtatga |
240 |
Q |
| |
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||| |||| |
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| T |
10462170 |
tacgaatga |
10462162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 10539854 - 10539977
Alignment:
| Q |
132 |
cttcttccctcttcctctctccgcttatcacaagcacgttatcatcttccacctgaaccttaatatccccagatttcaatcctggcatgtcaatcacgaa |
231 |
Q |
| |
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||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||| ||||| ||||||||| ||| |||| || || |||| |
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| T |
10539854 |
cttcttccctcttcctctcgccggttatcacaaccacattatcatcttcaacctcaaccttgatatcatcagatttcattcccagcatatctgtctcgaa |
10539953 |
T |
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| Q |
232 |
cacgtatgaattctgatcttcctt |
255 |
Q |
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|||||| || || |||| |||||| |
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| T |
10539954 |
cacgtacgagttttgatattcctt |
10539977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 10543464 - 10543543
Alignment:
| Q |
98 |
tccattctcaaatactttgcaccaccttctttctcttcttccctcttcctctctccgcttatcacaagcacgttatcatc |
177 |
Q |
| |
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||||||||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || ||||| |
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| T |
10543464 |
tccattctcaaatacttaacaccttcttctacttcttcttccctcttcctttctccacttatcacaaccacattttcatc |
10543543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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