View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13402_high_22 (Length: 345)
Name: NF13402_high_22
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 197 - 321
Target Start/End: Original strand, 44799682 - 44799806
Alignment:
| Q |
197 |
ggttgcttgcggcacaagaatctggttcagcttaaaggacagtgttgtgaagggaatgaactggttttggtttatgagtatttaccatatggaagccttc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
44799682 |
ggttgcttgcggcacaagaatctggttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttg |
44799781 |
T |
|
| Q |
297 |
ataaagttcttcatagaaatttaag |
321 |
Q |
| |
|
|||||||||| ||||| |||||||| |
|
|
| T |
44799782 |
ataaagttctgcataggaatttaag |
44799806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 8350082 - 8349969
Alignment:
| Q |
11 |
caaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaatttacatctgctactt-atcaaga |
109 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||| || | | |
|
|
| T |
8350082 |
caaagggagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagtcatgcaatgttaatttacatctgctacttaattatca |
8349983 |
T |
|
| Q |
110 |
agagtgtaatcaac |
123 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8349982 |
agagtgtaatcaac |
8349969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 8260650 - 8260574
Alignment:
| Q |
11 |
caaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtattaat |
87 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||| ||||| ||| || ||||||||||| ||||||||| |
|
|
| T |
8260650 |
caaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtattaat |
8260574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 8349669 - 8349624
Alignment:
| Q |
187 |
ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8349669 |
ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
8349624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 8352803 - 8352758
Alignment:
| Q |
16 |
ggagctccgattgtagtttcttatttccctgttaactattatccct |
61 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8352803 |
ggagcttcaattgtagtttcttatttccctgttaactattatccct |
8352758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 8252928 - 8252867
Alignment:
| Q |
11 |
caaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtag |
72 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||||||| ||| || ||| ||||||||| |
|
|
| T |
8252928 |
caaagggagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtag |
8252867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 8334083 - 8334018
Alignment:
| Q |
11 |
caaagggagctccgattgtagtttcttatttccctgttaactattat-ccctcgcgcttgtagtca |
75 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
8334083 |
caaaaggagttccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtca |
8334018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 8265616 - 8265551
Alignment:
| Q |
11 |
caaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat |
76 |
Q |
| |
|
||||||||||||| |||||||| | | ||||||||| ||||| ||||| ||| || |||||||||| |
|
|
| T |
8265616 |
caaagggagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat |
8265551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University