View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_28 (Length: 331)
Name: NF13402_high_28
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 52646767 - 52646447
Alignment:
| Q |
1 |
cagtaaaaaccattacatgaattaatctgtagtggagaattggatggatcatattcaaccctcaataagtatataatgatggtgagcctaaatatagagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646767 |
cagtaaaaaccattacatgaattaatctgtagtggagaattggatggatcatattcaaccctcaataagtatataatgatggtgagcctaaatatagagc |
52646668 |
T |
|
| Q |
101 |
ttgagactcgataatttcaattcttgaactcaatcaatcgcccttaagtgtgacagctgaagcaaatgagttaaccaagagaatgaaagagctcaccaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646667 |
ttgagactcgataatttcaattcttgaactcaatcaatcgcccttaagtgtgacagctgaagcaaatgagttaaccaagagaatgaaagagctcaccaca |
52646568 |
T |
|
| Q |
201 |
ggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagcccagtttaggtatgcatgaccagcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52646567 |
ggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagcccagtttaggtatgcatgaccagcag |
52646468 |
T |
|
| Q |
301 |
ctcctgttgccctgctctctg |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
52646467 |
ctcctgttgccctgctctctg |
52646447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 192 - 304
Target Start/End: Complemental strand, 7345384 - 7345272
Alignment:
| Q |
192 |
ctcaccacaggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagcccagtttaggtatgcat |
291 |
Q |
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|||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||| |||||||| |
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| T |
7345384 |
ctcaccactggatctggggcatcatcttccttacacatcacccaagggacacctgtacctaatccaacagccatttttgcagcccagtttgagtatgcat |
7345285 |
T |
|
| Q |
292 |
gaccagcagctcc |
304 |
Q |
| |
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|||||| |||||| |
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| T |
7345284 |
gaccagaagctcc |
7345272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 8141258 - 8141341
Alignment:
| Q |
195 |
accacaggatctggggcatcattttccttgcacatcacccaagggactcctgttcccaatccaacagccatatttgcagcccag |
278 |
Q |
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||||| |||||||| ||||||| |||||||||||| | ||| || || || ||||||| | |||||||||| || ||||||||| |
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| T |
8141258 |
accactggatctggagcatcatcttccttgcacataatccatggaaccccagttcccatttcaacagccattttcgcagcccag |
8141341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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