View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_30 (Length: 329)
Name: NF13402_high_30
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 54496494 - 54496803
Alignment:
| Q |
20 |
gtgcacgaagtgaatgagcatgattatataatgtgtcatacaaatggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaatag |
119 |
Q |
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| T |
54496494 |
gtgcacgaagtgaatgagcatgattatataatgtgtcatacaaatggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaatag |
54496593 |
T |
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| Q |
120 |
gagtatatcatttcataagtggaacaaagcgtcattgcaagatgggattaaagctggctgtcgttgtccaaaacaagcatgacctagttctcccacctct |
219 |
Q |
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| T |
54496594 |
gagtatatcatttcataagtggaacaaagcgtcattgcaagatgggattaaagctggctgtcgttgtccaaaacaagcatgacctagttctcccacctct |
54496693 |
T |
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| Q |
220 |
aattacaatgcctatgccaccttcgccttcaccgtcaccaaattcgtccggtaataaaggtgctgctgctggtcttggattcatcatgtggttgggggtt |
319 |
Q |
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| T |
54496694 |
aattacaatgcctatgccaccttcgccttcaccgtcaccaaattcgtccggtaataaaggtggtgctgctggtcttggattcatcatgtggttgggggtt |
54496793 |
T |
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| Q |
320 |
tcattggtga |
329 |
Q |
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| T |
54496794 |
tcattggtga |
54496803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 54504639 - 54504760
Alignment:
| Q |
65 |
ggagaacatgtggagcaccacgacggcaacactaaggttgtgcttgataaaataggagtatatcatttcataagtggaacaaagcgtcattgcaagatgg |
164 |
Q |
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| T |
54504639 |
ggagagcatgtagaccactacgacggcaatacaatggtggtgcttaagaaaacaggaatacatcatttcataagtggaaaaaagcgtcattgcaggttgg |
54504738 |
T |
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| Q |
165 |
gattaaagctggctgtcgttgt |
186 |
Q |
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| T |
54504739 |
gtttaaagctagctgttgttgt |
54504760 |
T |
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