View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13402_high_33 (Length: 325)

Name: NF13402_high_33
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13402_high_33
NF13402_high_33
[»] chr5 (1 HSPs)
chr5 (13-325)||(1653424-1653736)


Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 13 - 325
Target Start/End: Original strand, 1653424 - 1653736
Alignment:
Q  13 cagaacaagaaggtttgtcagttcaacatattgtttttggcatagctggatcatctcagctttggaaacggaggaaggaatatattagactatggtggcg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653424 cagaacaagaaggtttgtcagttcaacatattgtttttggcatagctggatcatctcagctttggaaacggaggaaggaatatattagactatggtggcg 1653523  T
Q  113 tcccaatgacatgcgtggccatgtctggttagaggaaaaagtggttgaagaacatggagatgagttattaccccctaccatgatttctggagacatttcg 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653524 tcccaatgacatgcgtggccatgtgtggttagaggaaaaagtggttgaagaacatggagatgagttattaccccctaccatgatttctggagacatttcg 1653623  T
Q  213 tacttccgttacactaatcccataggtcacccttctggcctccggatttctcgcattatcaaagaaagctttcgccttggtctctcagatgtgcgttggt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1653624 tacttccgttacactaatcccataggtcacccttctggcctccggatttctcgcattatcaaagaaagctttcgccttggtctctcagatgtgcgttggt 1653723  T
Q  313 ttgttctatgtga 325  Q
    |||| ||||||||    
T  1653724 ttgtcctatgtga 1653736  T

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