View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_40 (Length: 315)
Name: NF13402_high_40
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_40 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 2332492 - 2332189
Alignment:
| Q |
10 |
aacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttcc |
109 |
Q |
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| T |
2332492 |
aacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttcc |
2332393 |
T |
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| Q |
110 |
atagttacaggcaagagaagctggtccatcaagttaatgctaagagatggaatattatccagttgtaaactatatgagaggtttacagggatcatttgat |
209 |
Q |
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| T |
2332392 |
atagtgacaggcaagagaagctggtccatcaagctaatgccaagagatggaatattatccagttgtaaactatatgagaggtttacagggatcatttgat |
2332293 |
T |
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| Q |
210 |
tggaatagattcataaaaaactttgaggcttcccttttgagagtgcttgcattcgtgcaccatatgttttccacattcaaaccagaaattttatttcgtc |
309 |
Q |
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| T |
2332292 |
tgggatagatgcataaaaaactttgaggcttcccttttgagagtgcttgcattcgtgcacc--atgttttccacattcaaaccagaaattttatttcgcc |
2332195 |
T |
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| Q |
310 |
gtcttc |
315 |
Q |
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|||||| |
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| T |
2332194 |
gtcttc |
2332189 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 1261820 - 1261909
Alignment:
| Q |
10 |
aacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatcttt |
99 |
Q |
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| T |
1261820 |
aacaatatgccaataagttttgaaaaaaataggttgaaaaccatctggacccggggctttgtaagagtgcattgagaaaatagcatcttt |
1261909 |
T |
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