View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13402_high_7 (Length: 410)
Name: NF13402_high_7
Description: NF13402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13402_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 8014090 - 8014304
Alignment:
| Q |
1 |
attctgacactcacgatccgacataagctatagttgacttgagaaacatttcttctatatttgannnnnnnctagttggactatcatttattaagcgata |
100 |
Q |
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| T |
8014090 |
attctaacattcacgatccgacataagttgtagttgacttgagaaacatttcttctatatttgatttttt-ctagttggactattatttattaagcggta |
8014188 |
T |
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| Q |
101 |
aagaagattcagctaaatctaatctagatgtttaccatgtttata--ttctttttcgaaaagnnnnnnnnnnnncataaaatattcgtaggtgttaacaa |
198 |
Q |
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| T |
8014189 |
gaggagattcagctaaatctaatttagatgtttacaatgtttatatttttttttttgcaaa----aaaaaaaaacataaaatattcgtaggtgttaacaa |
8014284 |
T |
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| Q |
199 |
gtaagtataataagtttcct |
218 |
Q |
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|||||||||||||||||||| |
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| T |
8014285 |
gtaagtataataagtttcct |
8014304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 8014375 - 8014490
Alignment:
| Q |
288 |
gtttaacattttcttataatt-gaaatttaaaaactccaaacattttgtttatacatgggaccagatggaggagggtataagtataactatagtgtaaaa |
386 |
Q |
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||||| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
8014375 |
gtttagcattttcttataatttgagattaaaaaactccaaacattttgtttatacatgggaccagatg--gga-ggtata-----aactatagtgtaaaa |
8014466 |
T |
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| Q |
387 |
ttcacccacgtttgaccagctcat |
410 |
Q |
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|||||||||||||||||||||||| |
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| T |
8014467 |
ttcacccacgtttgaccagctcat |
8014490 |
T |
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