View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13403_high_1 (Length: 463)
Name: NF13403_high_1
Description: NF13403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13403_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 96 - 446
Target Start/End: Complemental strand, 22250126 - 22249778
Alignment:
| Q |
96 |
tattctaattgagatcgattatttggtgttatattttcatttttcatttgtaccaaaagtgtaatttcatttgtcctcctttttaaaatgcacatgggtt |
195 |
Q |
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| T |
22250126 |
tattctaattgagatcgattatt-gttgttaaattttcatttttcctttgtaccaaaagtgtaatttcatttgtcctcctttttaaaatgcacatgggtt |
22250028 |
T |
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| Q |
196 |
tggtcatgagattttttaccattttagaagtcatccgaataacaaaaagaaacaaattctcacctgctctgtttcacacaaatcatgtatctcacataag |
295 |
Q |
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| T |
22250027 |
tggtcatgagattttttactattttagaagtcatctggataacaaaaagaaacaaattctcacctgctc-gaatcacacaaatcatgtatctcacataag |
22249929 |
T |
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| Q |
296 |
acacatatatcatgattctccctattttataccaaaaacaacaacgagtgctataacaaaagagaccattcttctattatcttcccttctctcacttttc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22249928 |
acacatatatcatgattctccctattttataccaaaaacaacaacgagtgctataacaaaagagaccattcttctattatcttcccttctctcacttttc |
22249829 |
T |
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| Q |
396 |
tccaatattttatatcatttctcaaccaaactcatatatcagtcttaatag |
446 |
Q |
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| T |
22249828 |
tccaatattttatatcatttctcaaccaaactcatatatcagtcttaatag |
22249778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 22250502 - 22250408
Alignment:
| Q |
1 |
atatacagctatcgcagtaaattctattaacaacatactgaatgaaaacattcagcatttcagatatctttctctgtcaaccatgtataattttc |
95 |
Q |
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|||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22250502 |
atatacagctatcgtagtgtattttattaacaacatactgaatgaaaacattcagcatttcagatatctttctctgtcaaccatgtataattttc |
22250408 |
T |
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