View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13403_low_3 (Length: 445)
Name: NF13403_low_3
Description: NF13403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13403_low_3 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: scaffold0283 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 67 - 319
Target Start/End: Complemental strand, 19662 - 19408
Alignment:
| Q |
67 |
atcagttctacctaaaagctactatttctagcttctgttgacacatagaaaccatggtcaaacttattaacatatatacacacaaaaacaattctgatgc |
166 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
19662 |
atcagttctacataaaagctactatttctagcttctgttgagacatagaatcaatgctcaaacttattaacatatatacacaaaaaaacaattctgatcc |
19563 |
T |
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| Q |
167 |
aaactattcaaacatactcaatggataaatatcacannnnnnnngtga---aaccaaatatataaatcattttatgttgaactcactttcatccaagatc |
263 |
Q |
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| T |
19562 |
aaactattcaaacatacttgatggataaatatcac-ttttttttgtgaactaaccaaatatttaaatcattttatgctgaactcactttcatccaagatc |
19464 |
T |
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| Q |
264 |
attttagaaagtcaattaagtcaaaatcaatttcagtcccaacagaaccaaacaca |
319 |
Q |
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| T |
19463 |
attttagaaagtcaattaagtcaaaatcaatttcagccccaacagaatcaaacaca |
19408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 67 - 319
Target Start/End: Complemental strand, 42725688 - 42725434
Alignment:
| Q |
67 |
atcagttctacctaaaagctactatttctagcttctgttgacacatagaaaccatggtcaaacttattaacatatatacacacaaaaacaattctgatgc |
166 |
Q |
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| T |
42725688 |
atcagttctacataaaagctactatttctagcttctgttgagacatagaatcaatgctcaaacttattaacatatatacacaaaaaaacaattctgatcc |
42725589 |
T |
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| Q |
167 |
aaactattcaaacatactcaatggataaatatcacannnnnnnngtga---aaccaaatatataaatcattttatgttgaactcactttcatccaagatc |
263 |
Q |
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| T |
42725588 |
aaactattcaaacatacttgatggataaatatcac-ttttttttgtgaactaaccaaatatttaaatcattttatgctgaactcactttcatccaagatc |
42725490 |
T |
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| Q |
264 |
attttagaaagtcaattaagtcaaaatcaatttcagtcccaacagaaccaaacaca |
319 |
Q |
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| T |
42725489 |
attttagaaagtcaattaagtcaaaatcaatttcagccccaacagaatcaaacaca |
42725434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 377 - 425
Target Start/End: Complemental strand, 41833738 - 41833690
Alignment:
| Q |
377 |
ttttttcacttgtttcagcttgtggttcctattcatgcaaccctactcc |
425 |
Q |
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| T |
41833738 |
ttttttcacttgtttcagcttgtggttcctattcatgcaaccctactcc |
41833690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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