View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13403_low_5 (Length: 373)
Name: NF13403_low_5
Description: NF13403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13403_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 38348780 - 38348423
Alignment:
| Q |
1 |
agagagacaaacaaaaa-ggtagtaataagtaataacaaagcacgcctgccagaacataacagaaactaagaaaggaataaacgagagatgcttcttcta |
99 |
Q |
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| T |
38348780 |
agagagacaaacaaaaaaggtagtaataagtaataacaaagcacgcctgccagaacataacagaaactaagaaaggaataaacgagagatgcttcttcta |
38348681 |
T |
|
| Q |
100 |
acagtaatttcactcaccttttaggtttaaagtttgttgtgcgtctttcagtatgttgaagagatcgttaggattaggaacttggtccacaaaataggaa |
199 |
Q |
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| T |
38348680 |
acagtaatttcactcaccttttaggtttaaagtttgttgtgtgtctttcagtatgttgaagagatcgttaggattaggaacttggtccacaaaataggaa |
38348581 |
T |
|
| Q |
200 |
agagtgaggctgtcacagcatgacctagtcaaggttagggttacttactctctcttctttccattcaaaagaaagctctctaaccaaagtttagatcatg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38348580 |
agagtgaggctgtcacagcatgacctagtcaaggttagggttacttactctctcttctttccattcaaaagaaagctctctaaccaaagtttagatcatg |
38348481 |
T |
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| Q |
300 |
ctggcagcttcactttttcctttgtgaactttcatcttcatctccagcaacagttatg |
357 |
Q |
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| T |
38348480 |
ctggcagcttcactttttcctttgtgaactttcatcttcatctccagcaatagttatg |
38348423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 31573364 - 31573399
Alignment:
| Q |
291 |
tagatcatgctggcagcttcactttttcctttgtga |
326 |
Q |
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| T |
31573364 |
tagatcatgctggcagcttcactttttcctttgtga |
31573399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 31573063 - 31573108
Alignment:
| Q |
191 |
aaataggaaagagtgaggctgtcacagcatgacctagtcaaggtta |
236 |
Q |
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||||||||| |||||||||| |||||||||||||||||| ||||| |
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| T |
31573063 |
aaataggaaggagtgaggctagcacagcatgacctagtcagggtta |
31573108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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