View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13403_low_8 (Length: 222)
Name: NF13403_low_8
Description: NF13403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13403_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 24564569 - 24564375
Alignment:
| Q |
6 |
tttggtgtttgatacgtccccgtattcgtcgcctacaagatatagatacatgtgattatattgaattatattattttttaaaataattgtcggtgttcag |
105 |
Q |
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| T |
24564569 |
tttggtgtctgatacgttcccgtattcgtcgcctacaaaatatagatacatgtgattacattgaattatattattttttaaaataattgtcggtgttcag |
24564470 |
T |
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| Q |
106 |
atgttagtgtctctgtgtatattccgattctttatacatgctaatacatttaatacccattccaaaccatattcattgagtaacttggtctgcgc |
200 |
Q |
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| T |
24564469 |
atgttagtgtctctgtgtatattccgatgctttatacatgccaatacatttaatacccattccaaaccatattcattgagtaacttggtctgcgc |
24564375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 9800795 - 9800608
Alignment:
| Q |
6 |
tttggtgtttgatacgtccccgtattcgtcgcctacaagatatagatacatgtgattatattgaattatattattttttaaaataattgtcggtgttcag |
105 |
Q |
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| T |
9800795 |
tttggtgtctcatatgtcccagtattcgacaccgacaagatatagatacatgtgaatagattgaattatattattttttaaa-taattatcggtattcag |
9800697 |
T |
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| Q |
106 |
atgttagtgtctctgtgtatattccgattctttatacatgctaatacatttaatacccattccaaaccatattcattgagtaacttggt |
194 |
Q |
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| T |
9800696 |
atgttagtgtctctatgtatatgctgatgctttatacatgctaatacatttaatacccattcataaccatattcattgagtaacttggt |
9800608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 200
Target Start/End: Original strand, 45534957 - 45535088
Alignment:
| Q |
69 |
aattatattattttttaaaataattgtcggtgttcagatgttagtgtctctgtgtatattccgattctttatacatgctaatacatttaatacccattcc |
168 |
Q |
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||||||||||||||||||||||||| || ||||||| |||||||||||||| ||||||| | | ||||||||||||||||||| ||| ||||| ||| |
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| T |
45534957 |
aattatattattttttaaaataattatcagtgttcacatgttagtgtctctatgtatatgttgttgctttatacatgctaatacacttagcacccagtcc |
45535056 |
T |
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| Q |
169 |
aaaccatattcattgagtaacttggtctgcgc |
200 |
Q |
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| T |
45535057 |
taaccagattcaatgagtaacttggtgtgcgc |
45535088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 44338572 - 44338415
Alignment:
| Q |
44 |
gatatagatacatgtgattatattgaattatattattttttaaaataattgtcggtgttcagatgttagtgtctctgtgtatattccgattctttataca |
143 |
Q |
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| T |
44338572 |
gatatagatacatatgattatatttaattgtgttatttctcaaa-taattgtctttgttcacatgttaatgtctctgggtatatgtcgacgttttataca |
44338474 |
T |
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| Q |
144 |
tgctaatacatttaataccca-ttccaaaccat-attcattgagtaacttggtctgcgc |
200 |
Q |
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| T |
44338473 |
tgctaatacatttaatagccatttcctaaccatgtttcattgactaacttggtgtgcgc |
44338415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 34745241 - 34745205
Alignment:
| Q |
50 |
gatacatgtgattatattgaattatattattttttaa |
86 |
Q |
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| T |
34745241 |
gatacatgtgattatattgaattatgttattttttaa |
34745205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 29519244 - 29519195
Alignment:
| Q |
53 |
acatgtgattatattgaattatattattttttaaaataattgtcggtgtt |
102 |
Q |
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| T |
29519244 |
acatgttattacattgaattatatgattttttaaaattattatcggtgtt |
29519195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 19680033 - 19679993
Alignment:
| Q |
49 |
agatacatgtgattatattgaattatattattttttaaaat |
89 |
Q |
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|||| |||||||||||||| |||||| |||||||||||||| |
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| T |
19680033 |
agatgcatgtgattatattcaattatgttattttttaaaat |
19679993 |
T |
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