View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13404_high_1 (Length: 485)
Name: NF13404_high_1
Description: NF13404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13404_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 33966897 - 33967196
Alignment:
| Q |
21 |
tgctcttgttgtattgtaggttgataaaccgtttcgagcggaacgtatcggtcgaattccttttgtatgacaatgtatcgtggtcagattttgtacaaga |
120 |
Q |
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| T |
33966897 |
tgctcttgttgtattgtaggttgataaaccgtttcgagcagaacgtatcggtcgaattccttttgtatgacaatgtattgtggtcagattttgtacaaga |
33966996 |
T |
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| Q |
121 |
agaagaagaaataacaacatgctgaaaatgtaatgcatgtttgacattcttaagagaagattgtgaaaatgaaaaaatgatggagaatggtatgttttag |
220 |
Q |
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| T |
33966997 |
agaagaagaaataacaacatgctgaaaatgtaatgcatgtttgacattcttaagagaagattgtgaaaatgaaaaaatgatggagaatggtatgttttgg |
33967096 |
T |
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| Q |
221 |
tttggtttatatatactagttatgtttccaaaatgcgcgtaatcgtaggttttggtttcgaattcagtcatagaactgcaataagattaaaactctaaac |
320 |
Q |
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| T |
33967097 |
tttggtttatatatactagttatgtttccaaaatgcgcgtaatcataggttttggtttcgaattcagtcatagaactgcaataagattaaaactctaaac |
33967196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 303 - 477
Target Start/End: Original strand, 33967212 - 33967386
Alignment:
| Q |
303 |
aagattaaaactctaaacaaaatatttggtcatatattatggtcctatccgactcgagagattagtctgtgtgattgtgcgctgaggatatgtaggttac |
402 |
Q |
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| T |
33967212 |
aagattaaaactctaaacaaaatatttggtcatatattatggtcttatctaactcgagagattagtctgtgtgattgtgcgctgaggatatgtaggttac |
33967311 |
T |
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| Q |
403 |
attatagtagtaatgtttatggtacttatttttggttgaaaagtgaagcaatgacagaagtatgtcacgggtagt |
477 |
Q |
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| T |
33967312 |
attatagtagtaatgtttatggtacttatttttggttgaaaagtgaagcaatgacagaagtatgtcacgggtagt |
33967386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 370
Target Start/End: Complemental strand, 10413232 - 10413204
Alignment:
| Q |
342 |
tggtcctatccgactcgagagattagtct |
370 |
Q |
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| T |
10413232 |
tggtcctatccgactcgagagattagtct |
10413204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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