View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13404_high_4 (Length: 366)
Name: NF13404_high_4
Description: NF13404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13404_high_4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 3215311 - 3214960
Alignment:
| Q |
14 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
3215311 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcaaatgcttgcaaaggcaagacaac-ttcgtgttgaattgcgtgctacct |
3215213 |
T |
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| Q |
114 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcctcaattgatgatccaattcctgtcaatcagcactt |
213 |
Q |
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| T |
3215212 |
cgtttgataatcgtacggtgcaagagtatctcattcatactcgcaatcttatagacaatcttgcttcaattgatgatccaattcctgtcaatcagcactt |
3215113 |
T |
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| Q |
214 |
agatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
313 |
Q |
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| T |
3215112 |
agatgttattttggaaggtttaccacatggttatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctg |
3215013 |
T |
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| Q |
314 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatga |
366 |
Q |
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| T |
3215012 |
ctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatga |
3214960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 32460826 - 32460474
Alignment:
| Q |
14 |
cttcgcatgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacct |
113 |
Q |
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| T |
32460826 |
cttcgcatgcgtatgaacttcggaacaaacttgtgacctattttcacaagcagatgcgtgcaaaggcaaggcagt-tacgtgttgaactgcgttctactt |
32460728 |
T |
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| Q |
114 |
cgtttgataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcct-caattgatgatccaattcctgtcaatcagcact |
212 |
Q |
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| T |
32460727 |
ctcttgataatcgtacggtacaggagcatcttcttcgcattcgcaatttaattgataatcttgctttccattggtgatccagttcccattactcagcatt |
32460628 |
T |
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| Q |
213 |
tagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctct |
312 |
Q |
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| T |
32460627 |
tagatgtaattttagaaggtttaccacaagagtatagtccagtgatttcagttgttgaaagcaaatttgacactattgatattgatgaggtagagtctct |
32460528 |
T |
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| Q |
313 |
gctaattgctcatgaaactcgtcttgacaagttcaagaagaaaactcttgatga |
366 |
Q |
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| T |
32460527 |
gttaattgctcatgagactcgtcttgacaagttcaagaagaagactattgatga |
32460474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 36399779 - 36399448
Alignment:
| Q |
19 |
catgcgtataaactctagaacaaacttgtgacctattttcaaaagcagatgcttgcaaaggcaagacaacattcgtgttgaattgcgcgctacctcgttt |
118 |
Q |
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||||||||| |||| | | | ||||||||| | |||||||| || ||||||| ||| ||||| | |||| || |||||||| |||| |||| || || |
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| T |
36399779 |
catgcgtatgaactttgggataaacttgtggcatattttcacaaacagatgcgtgcgaaggcgcgtcaac-ttagtgttgaactgcgttctacttctctt |
36399681 |
T |
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| Q |
119 |
gataatcgtacggtacaagagtatctcattcgtactcgcaatcttatagacaatcttgcctcaattgatgatccaattcctgtcaatcagcacttagatg |
218 |
Q |
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| T |
36399680 |
gcaaatcttacggtacaggattatcttcttcgtattcgtgatcttgttgataatctagcctctataggagatccagttcctgttaatcaacatttggatg |
36399581 |
T |
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| Q |
219 |
ttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacatagatgaggttgaatctctgctaat |
318 |
Q |
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| T |
36399580 |
tgattttagaaggtttaccgcaagattttagtcctgttatatctgtagtggaaagcaaatttgatgttattgacgttgacgaagttgagtctcttcttct |
36399481 |
T |
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| Q |
319 |
tgctcatgaaactcgtcttgacaagttcaagaa |
351 |
Q |
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| T |
36399480 |
tgctcatgaaacacgtcttgataaattcaagaa |
36399448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 351
Target Start/End: Complemental strand, 52665923 - 52665850
Alignment:
| Q |
278 |
tttgatgttattgacatagatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
351 |
Q |
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| T |
52665923 |
tttgatgttattgacattgacgaagttgagtctcttcttcttgctcatgaaacacgtcttgataaattcaagaa |
52665850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 351
Target Start/End: Complemental strand, 24789452 - 24789296
Alignment:
| Q |
195 |
ttcctgtcaatcagcacttagatgttattttggaaggtttaccacatggatatagtccagttatctctgttgttgagagtaagtttgatgttattgacat |
294 |
Q |
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||||||| ||||| || || ||||| ||||| |||||||||||||| | | |||||| |||| | ||| || || || || ||||||||||||||| | |
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| T |
24789452 |
ttcctgttaatcaacatttggatgtgattttagaaggtttaccacaagattttagtcctattatatttgtagtggaaagcaaatttgatgttattgacgt |
24789353 |
T |
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| Q |
295 |
agatgaggttgaatctctgctaattgctcatgaaactcgtcttgacaagttcaagaa |
351 |
Q |
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| T |
24789352 |
tgacgaagttgagtctcttcttcttactcatgaaacacgtcttgataaattcaagaa |
24789296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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