View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13404_high_6 (Length: 358)

Name: NF13404_high_6
Description: NF13404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13404_high_6
NF13404_high_6
[»] chr8 (13 HSPs)
chr8 (16-346)||(5568827-5569157)
chr8 (147-346)||(6313483-6313686)
chr8 (172-346)||(14403397-14403574)
chr8 (145-345)||(5598190-5598394)
chr8 (145-345)||(5636881-5637085)
chr8 (178-260)||(32632894-32632976)
chr8 (179-346)||(5547674-5547838)
chr8 (151-346)||(5624689-5624883)
chr8 (277-345)||(5572935-5573003)
chr8 (279-346)||(13164524-13164591)
chr8 (180-260)||(13164598-13164678)
chr8 (146-186)||(14403587-14403627)
chr8 (277-346)||(5562488-5562557)
[»] scaffold0363 (2 HSPs)
scaffold0363 (172-346)||(15279-15456)
scaffold0363 (146-186)||(15226-15266)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 5569157 - 5568827
Alignment:
Q  16 attctccccaagaaagtatcaaagcttaaaagtttgagacaccccattgataaaacttaccatttcttatataatcatccaggtcaattagagaaccatg 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5569157 attctccccaacaaagtatcaaagcttaaaagtttgagacaccccattgataaaacttaccatttcttatataatcatccagttcaattagagaaccatg 5569058  T
Q  116 atgaaaacatcggtattaagacaagtggattgataaaatataattttaatgtatgcaaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5569057 atgaaaacatcggtattaagacaagtggattgataaaatataattttaatgtatacaaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaat 5568958  T
Q  216 tagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttctcttgcttgtgtttcgcgaacgcactgccataactccctgtctg 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  5568957 tagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcttggttctcttgcttgtgtttcgccaatgcactgccataactcccggtctg 5568858  T
Q  316 cttccgcacatgtgaagggtcaacatggtag 346  Q
    |||||||||||||||||||||||||||||||    
T  5568857 cttccgcacatgtgaagggtcaacatggtag 5568827  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 147 - 346
Target Start/End: Original strand, 6313483 - 6313686
Alignment:
Q  147 gataaaatataattttaatgtatgcaaagact-aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaat 245  Q
    |||||||| ||||||||||||||||||| ||  |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  6313483 gataaaatttaattttaatgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagctgcttgaaaaagagcattcttccaat 6313582  T
Q  246 tttgcatcatcttatcatcttggttctcttg---cttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatg 342  Q
    ||||||||||||||||||| |  ||  ||||   |||||||||    |||||| |||||||||| || |||||||||||||| |||||||||||||||||    
T  6313583 tttgcatcatcttatcatcatttttgccttgtttcttgtgtttaatcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatg 6313682  T
Q  343 gtag 346  Q
    ||||    
T  6313683 gtag 6313686  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 172 - 346
Target Start/End: Complemental strand, 14403574 - 14403397
Alignment:
Q  172 aaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttc 271  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |||     
T  14403574 aaagactaaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttg 14403475  T
Q  272 tcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtag 346  Q
    |||||||   | |||||  | |||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  14403474 tcttgctccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtag 14403397  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 145 - 345
Target Start/End: Original strand, 5598190 - 5598394
Alignment:
Q  145 ttgataaaatataattttaatgtatgcaaagactaaaa-acctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttcta 243  Q
    |||| ||||| ||||||||||  ||||||||| ||||| |||||||||| |  ||||||||||||||||||||||| |||||||||||| |||||||| |    
T  5598190 ttgacaaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttcca 5598289  T
Q  244 attttgcatcatcttatcatcttggttctcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaaca 340  Q
    |||||| |||||||||||||| | |||  ||||||   ||||||| || |  |||  ||| |||  |||||| || |||||||| |||||||||||||||    
T  5598290 attttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaaca 5598389  T
Q  341 tggta 345  Q
    |||||    
T  5598390 tggta 5598394  T

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Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 145 - 345
Target Start/End: Complemental strand, 5637085 - 5636881
Alignment:
Q  145 ttgataaaatataattttaatgtatgcaaagactaaaaa-cctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttcta 243  Q
    |||| ||||| ||||||||||  ||||||||| |||||| ||||||||| |  ||||||||||||||||||||||| |||||||||||| |||||||| |    
T  5637085 ttgacaaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttcca 5636986  T
Q  244 attttgcatcatcttatcatcttggttctcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaaca 340  Q
    |||||| |||||||||||||| | |||  ||||||   ||||||| || |  |||  ||| |||  |||||| || |||||||| |||||||||||||||    
T  5636985 attttgtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaaca 5636886  T
Q  341 tggta 345  Q
    |||||    
T  5636885 tggta 5636881  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 32632976 - 32632894
Alignment:
Q  178 taaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttat 260  Q
    |||| |||||||||| |  ||||||||||| || ||||| || ||||||||||||||||||||| ||||||||||||||||||    
T  32632976 taaatacctgtatgtggtagaatgaaaaccggataaattggctgcttgaaaaagagcattcttccaattttgcatcatcttat 32632894  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 346
Target Start/End: Complemental strand, 5547838 - 5547674
Alignment:
Q  179 aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttctcttg-- 276  Q
    |||||||||||||| |  |||||||||||||||||||||||||||| | |||||||| | ||| | |||||||||      ||||  | |||  ||||      
T  5547838 aaaaacctgtatgtggttgaatgaaaaccagacaaattagcagcttcagaaagagcagtattccatttttgcatc------tcatggtcgttgccttgct 5547745  T
Q  277 -cttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtag 346  Q
     ||||||||| || || ||| ||||||||||||| || ||||||| ||| |||||||||||||||||||||    
T  5547744 tcttgtgtttagccaaggcagtgccataactcccagtttgcttcctcacgtgtgaagggtcaacatggtag 5547674  T

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Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 346
Target Start/End: Complemental strand, 5624883 - 5624689
Alignment:
Q  151 aaatataattttaatgtatgcaaagacta--aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaatttt 248  Q
    |||||||||||||||  ||||||||| ||  ||||||||| | | |   |||||||||||||||||||||||||||||||||||||| | ||| | ||||    
T  5624883 aaatataattttaataaatgcaaagattagaaaaacctgtttttggctaaatgaaaaccagacaaattagcagcttgaaaaagagcagtattccattttt 5624784  T
Q  249 gcatcatcttatcatcttggttctcttg---cttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggta 345  Q
    |||||      ||||  | |||  ||||   ||||||||| || |  ||| |||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  5624783 gcatc------tcatggtcgttgccttgctccttgtgtttagccagagcagtgccataacttccggtctgtttccgcacttgtgaagggtcaacatggta 5624690  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 5573003 - 5572935
Alignment:
Q  277 cttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggta 345  Q
    ||||||||| || || ||| |||| |||||||| ||||||||||| || ||||||||||||||||||||    
T  5573003 cttgtgttttgccaaagcagtgccgtaactccccgtctgcttccggacgtgtgaagggtcaacatggta 5572935  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 13164591 - 13164524
Alignment:
Q  279 tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtag 346  Q
    ||||||| || || ||| |||| ||||| || ||||||||||| ||||||||||||||||||||||||    
T  13164591 tgtgttttgccaaagcagtgccgtaactgccagtctgcttccgaacatgtgaagggtcaacatggtag 13164524  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 13164678 - 13164598
Alignment:
Q  180 aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttat 260  Q
    ||||||||||||| |  ||||| || ||||| |||||||  ||||  ||||||||||||||| ||||||||| ||||||||    
T  13164678 aaaacctgtatgtggtagaatggaatccagataaattagatgcttcgaaaagagcattcttccaattttgcaacatcttat 13164598  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 14403627 - 14403587
Alignment:
Q  146 tgataaaatataattttaatgtatgcaaagactaaaaacct 186  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  14403627 tgataaaatttatttttaatgtatgcaaagactaaaaacct 14403587  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 5562557 - 5562488
Alignment:
Q  277 cttgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtag 346  Q
    ||||||||| || | |||| |||| ||||||||||| || ||||| ||||  ||||||||||||||||||    
T  5562557 cttgtgttttgccagcgcagtgccgtaactccctgtgtgtttccgaacatcagaagggtcaacatggtag 5562488  T

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Target: scaffold0363 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 172 - 346
Target Start/End: Original strand, 15279 - 15456
Alignment:
Q  172 aaagactaaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttctaattttgcatcatcttatcatcttggttc 271  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |||     
T  15279 aaagactaaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttg 15378  T
Q  272 tcttgct---tgtgtttcgcgaacgcactgccataactccctgtctgcttccgcacatgtgaagggtcaacatggtag 346  Q
    |||||||   | |||||  | |||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  15379 tcttgctccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtag 15456  T

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Target: scaffold0363; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 15226 - 15266
Alignment:
Q  146 tgataaaatataattttaatgtatgcaaagactaaaaacct 186  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  15226 tgataaaatttatttttaatgtatgcaaagactaaaaacct 15266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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