View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13405_high_1 (Length: 458)
Name: NF13405_high_1
Description: NF13405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13405_high_1 |
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| [»] scaffold0693 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 53440229 - 53440659
Alignment:
| Q |
19 |
aaggtgttagagctacccaagtatccagtcaaggtgatgaatctacccaagtacctgccagacgtgttgaagttaaccaagtacctagccaaggaaatgg |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53440229 |
aaggtgttagagctacccaagtatctagtcaaggtgatgaagctacc-aagtacctgccagacgtgttgaagttaaccaagtacctagccaaggaaatgg |
53440327 |
T |
|
| Q |
119 |
tacnnnnnnnnctgcatttactccaaaggtagctaagaaaatcgtcaaggaaaagcggaaaggaagacaatcaggaggggcagcaaaattaagcaatcaa |
218 |
Q |
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||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53440328 |
tacaaaaaaaactgcatttactctaaaggtggctaagaaaatcgtcaaggaaaagcggaaaggaagacaatcaggaggggcagcaaaattaagcagtcaa |
53440427 |
T |
|
| Q |
219 |
atagatgccttagtatcaaacactagcactgcagtggagatattgaattctgatgacagtttgggtaaacatgataacgctaactcaactgttgcagctg |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
53440428 |
atcgatgccttagtatcaaacactagcactgcagtggagatattgaattctgatgacagtttgggtaaacatcataacgctaactcaactgttgcagctg |
53440527 |
T |
|
| Q |
319 |
caatcgcaattattaataggatggttgctgaaaacaatctggaaaaagggagtgctttgtggtgttttgcacttactctaattgagaatgaagtgagacg |
418 |
Q |
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||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53440528 |
caatcacagttattaataggatgtttgctgaaaacaatctggaaaaagggagtgctttgtggtgttttgcacttactctgattgagaatgaagtgagacg |
53440627 |
T |
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| Q |
419 |
ggacatttttataaacattgaggatgatgatg |
450 |
Q |
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| T |
53440628 |
ggacatttttatgaacattgaggatgatgatg |
53440659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 42999135 - 42999566
Alignment:
| Q |
19 |
aaggtgttagagctacccaagtatccagtcaaggtgatgaatctacccaagtacctgccagacgtgttgaagttaaccaagtacctagccaaggaaatgg |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42999135 |
aaggtgttagagctacccaagtatctagtcaaggtgatgaagctacccaagtacctgccagacgtgttgaagttaaccaagtacttagccaaggaaatgg |
42999234 |
T |
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| Q |
119 |
tacnnnnnnnnctgcatttactccaaaggtagctaagaaaatcgtcaaggaaaagcggaaaggaagacaatcaggaggggcagcaaaattaagcaatcaa |
218 |
Q |
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||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42999235 |
tacaaaaaaaactgcatttactccaaaggtggctaagaaaatcgtcaaggaaaagcggaaaggaagacaatcaggaggggcaacaaaattaagcaatcaa |
42999334 |
T |
|
| Q |
219 |
atagatgccttagtatcaaacactagcactgcagtggagatattgaattctgatgacagtttgggtaaacatgataacgctaactcaactgttgcagctg |
318 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42999335 |
atagatgccttaatatcaaacactagcactgcagtggagctattgaattctgatgacagttcgggtaaacatgataacgctaactcaactgttgcagctg |
42999434 |
T |
|
| Q |
319 |
caatcgcaattattaataggatggttgctgaaaacaatctggaaaaagggagtgctttgtggtgttttgcacttactctaattgagaatgaagtgagacg |
418 |
Q |
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||||| || |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
42999435 |
caatcacagttattaataggatggttgttgaaaacaatctagaaaaagggagtgctttgtggtgttttgcacctactctgattgagaatgaagtgagacg |
42999534 |
T |
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| Q |
419 |
ggacatttttataaacattgaggatgatgatg |
450 |
Q |
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| T |
42999535 |
ggacatttttatgaacattgaggatgatgatg |
42999566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0693 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0693
Description:
Target: scaffold0693; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 6668 - 6510
Alignment:
| Q |
19 |
aaggtgttagagctacccaagtatccagtcaaggtgatgaatctacccaagtacctgccagacgtgttgaagttaaccaagtacctagccaaggaaatgg |
118 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6668 |
aaggtgttagagctacccaagtatctagtcaaggtgatgaagctacc-aagtacctgccagacgtgttgaagttaaccaagtacctagccaaggaaatgg |
6570 |
T |
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| Q |
119 |
tacnnnnnnnnctgcatttactccaaaggtagctaagaaaatcgtcaaggaaaagcggaa |
178 |
Q |
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||| |||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
6569 |
tacaaaaaaaactgcatttactctaaaggtggctaagaaaatcgtcaaggaaaagcggaa |
6510 |
T |
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