View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13405_low_2 (Length: 442)

Name: NF13405_low_2
Description: NF13405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13405_low_2
NF13405_low_2
[»] chr1 (10 HSPs)
chr1 (1-340)||(23896703-23897042)
chr1 (170-303)||(25611722-25611855)
chr1 (138-307)||(24512229-24512401)
chr1 (170-278)||(24234114-24234222)
chr1 (202-294)||(24635570-24635662)
chr1 (202-311)||(24247301-24247410)
chr1 (194-279)||(25869445-25869530)
chr1 (358-414)||(23897129-23897185)
chr1 (202-298)||(51831606-51831702)
chr1 (202-271)||(45693643-45693712)
[»] scaffold0015 (1 HSPs)
scaffold0015 (194-295)||(41133-41234)
[»] chr7 (1 HSPs)
chr7 (170-300)||(1421900-1422030)
[»] scaffold1004 (1 HSPs)
scaffold1004 (220-278)||(1397-1455)
[»] chr3 (2 HSPs)
chr3 (208-275)||(1941334-1941401)
chr3 (194-298)||(43991242-43991346)
[»] scaffold0760 (1 HSPs)
scaffold0760 (220-278)||(3891-3949)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 23896703 - 23897042
Alignment:
Q  1 caagaagcaatgaggtgatccatacaatctgtattaatgggagagtaatcgagttgtgtggcagtttcagatgtgaaaatagagtcaattgagtaagaca 100  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23896703 caagaagcaatgagtcgatccatacaatctgtattaatgggagagtaatcgagttgtgtggcagtttcagatgtgaaaatagagtcaattgagtaagaca 23896802  T
Q  101 ttacagataactcttttcttgacgagtgcaatgagcttgtgacgaggtgtttgcgtttggttgataagagaaggtgtttcttgaagaatttctgatcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23896803 ttacagataactcttttcttgacgagtgcaatgagcttgtgacgaggtgtttgcgtttggttgataagagaaggtgtttcttgaagaatttctgatcctt 23896902  T
Q  201 cgagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaacggaata 300  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  23896903 cgagattagagaattccatgacttgcagacgcagcggaattgtaggaggaacttgacagggagtctgcacaggatttcaaccacgagatcaaacggaata 23897002  T
Q  301 tgagtcaccggtgctgggagaagtagctgcctcttgtttg 340  Q
    |||||||||||||| ||||||||  |||||||||||||||    
T  23897003 tgagtcaccggtgcagggagaagccgctgcctcttgtttg 23897042  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 25611722 - 25611855
Alignment:
Q  170 gaaggtgtttcttgaagaatttctgatcattcgagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctaca 269  Q
    |||||||||||||||  || ||  |||||||||| ||||||||||||| ||||||||||||||| | |||||| ||||||||||| || ||||| |||||    
T  25611722 gaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagcctaca 25611821  T
Q  270 caggatttcaaccacgagatcaaacggaatatga 303  Q
     ||||||||||| |||| ||||||||||| ||||    
T  25611822 aaggatttcaacgacgacatcaaacggaacatga 25611855  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 307
Target Start/End: Complemental strand, 24512401 - 24512229
Alignment:
Q  138 tgtgacgaggtgtttgcgtttggttgataaga---gaaggtgtttcttgaagaatttctgatcattcgagattagagaattccctgacttgcagacgcag 234  Q
    |||||| ||||||||||||||||||| | | |   |||||| ||| |||  |||||   |||| || ||||| |||||||||| |||||||||||||||     
T  24512401 tgtgacaaggtgtttgcgtttggttgttgacatgcgaaggtattttttggcgaattcgagatcttttgagatcagagaattccatgacttgcagacgcat 24512302  T
Q  235 cggaattgcaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaacggaatatgagtca 307  Q
    | |||||||| |||||||||  | ||||||||||| || ||||||  ||||||||||||| ||||||||||||    
T  24512301 ccgaattgcacgaggaacttggcagggagtctacatagaatttcagtcacgagatcaaacagaatatgagtca 24512229  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 24234114 - 24234222
Alignment:
Q  170 gaaggtgtttcttgaagaatttctgatcattcgagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctaca 269  Q
    |||||||||| |||  ||||||  ||||||| ||||| || ||||||| |||||| ||||| ||||||||||| |||||||| || || |||||||||||    
T  24234114 gaaggtgttttttggtgaatttaggatcattagagataagcgaattccatgacttacagacacagcggaattgtaggaggaatttgacagggagtctaca 24234213  T
Q  270 caggatttc 278  Q
    || ||||||    
T  24234214 caagatttc 24234222  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 294
Target Start/End: Original strand, 24635570 - 24635662
Alignment:
Q  202 gagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaac 294  Q
    ||||| |||||||||| ||||||||||||||| | |||||||| |||||||||  | ||||||||||| || ||||||  || ||||||||||    
T  24635570 gagatcagagaattccatgacttgcagacgcatcagaattgcatgaggaacttggcagggagtctacatagaatttcagtcatgagatcaaac 24635662  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 24247301 - 24247410
Alignment:
Q  202 gagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaacggaatat 301  Q
    ||||| ||||||||||   |||||||||||||||||||| | | |||  |||| || |||||||| |||||||||||| |||||| ||| |||||||  |    
T  24247301 gagatgagagaattccacaacttgcagacgcagcggaatcgtaagagacacttgacagggagtctgcacaggatttcagccacgacatccaacggaagtt 24247400  T
Q  302 gagtcaccgg 311  Q
    ||| ||||||    
T  24247401 gagccaccgg 24247410  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 279
Target Start/End: Original strand, 25869445 - 25869530
Alignment:
Q  194 gatcattcgagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttca 279  Q
    ||||||| |||||||||||||||| ||||||||| | |||||||| ||||| |||||| || | ||||| ||| || |||||||||    
T  25869445 gatcatttgagattagagaattccatgacttgcaaatgcagcggagttgcatgaggaatttgatggggaatctgcataggatttca 25869530  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 23897129 - 23897185
Alignment:
Q  358 agtgaatcactaggtgttagggtttcggtttcggtggtcgctcggtgttgctttgtg 414  Q
    |||||||||||| ||||||||||||||||   ||||||||||| |||||||||||||    
T  23897129 agtgaatcactatgtgttagggtttcggtggaggtggtcgctcagtgttgctttgtg 23897185  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 51831702 - 51831606
Alignment:
Q  202 gagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaacggaa 298  Q
    ||||| ||||| |||| |||||||||||| || |||| ||| ||||| || || || ||||| |  ||||||||| | |||||||||||||||||||    
T  51831702 gagataagagagttccatgacttgcagacacaacggagttgaaggagaaatttcactgggagccggcacaggattactaccacgagatcaaacggaa 51831606  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 45693643 - 45693712
Alignment:
Q  202 gagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacaca 271  Q
    ||||||||||||||||  |||||||| | |||||||| ||| || || ||||| || |||||||||||||    
T  45693643 gagattagagaattccacgacttgcatatgcagcggagttgtagaagaaacttgaccgggagtctacaca 45693712  T

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Target: scaffold0015 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 41133 - 41234
Alignment:
Q  194 gatcattcgagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaa 293  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||| || || ||||||| ||| ||||||||| |||| ||||||||    
T  41133 gatcatttgagattagagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatcaaa 41232  T
Q  294 cg 295  Q
    ||    
T  41233 cg 41234  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 1421900 - 1422030
Alignment:
Q  170 gaaggtgtttcttgaagaatttctgatcattcgagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctaca 269  Q
    |||||||||| |||  ||||||  ||||||| ||||||||| ||||||  ||||| |||||||| |||||||| |||||||| || || |||||||||||    
T  1421900 gaaggtgttttttggcgaatttgggatcatttgagattagaaaattccacgacttacagacgcaacggaattgtaggaggaatttcactgggagtctaca 1421999  T
Q  270 caggatttcaaccacgagatcaaacggaata 300  Q
    || ||||||   |||||||||||||||||||    
T  1422000 caagatttctttcacgagatcaaacggaata 1422030  T

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Target: scaffold1004 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 1455 - 1397
Alignment:
Q  220 gacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttc 278  Q
    ||||||||||||||||| ||||| ||||| || || ||||| |||||||||||||||||    
T  1455 gacttgcagacgcagcgaaattgaaggagtaatttcacgggaagtctacacaggatttc 1397  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 1941334 - 1941401
Alignment:
Q  208 agagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggat 275  Q
    ||||||||||  |||||||| ||||| |||||||| ||||| | ||| |||||||||||||| |||||    
T  1941334 agagaattccacgacttgcaaacgcaccggaattgaaggagaagcttcacggggagtctacagaggat 1941401  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 43991346 - 43991242
Alignment:
Q  194 gatcattcgagattagagaattccctgacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttcaaccacgagatcaaa 293  Q
    ||||||||||||| ||||| ||||  |||||||||| |||  ||| ||||| ||| | ||| || || | |||||||||||||||  |||| || |||||    
T  43991346 gatcattcgagataagagatttccaggacttgcagatgcattggagttgcatgagtatcttcaccggtaatctacacaggatttcttccacaagttcaaa 43991247  T
Q  294 cggaa 298  Q
    |||||    
T  43991246 cggaa 43991242  T

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Target: scaffold0760 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 3949 - 3891
Alignment:
Q  220 gacttgcagacgcagcggaattgcaggaggaacttaacggggagtctacacaggatttc 278  Q
    ||||||||||||||||| ||||| ||||| || || ||||| || ||||||||||||||    
T  3949 gacttgcagacgcagcgaaattgaaggagtaatttcacgggaagcctacacaggatttc 3891  T

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