View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13405_low_3 (Length: 392)
Name: NF13405_low_3
Description: NF13405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13405_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 18805840 - 18805492
Alignment:
| Q |
13 |
atcatcatagaccgattttgtttgtattggttgtggatggcatgtttaagtcatttggaatatggataccaagaggagaagcaaaccaaaagagttaagt |
112 |
Q |
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| T |
18805840 |
atcatcagagaccgattttgtctgtattggttgtggatggcatgtttaagtcatttggaatatggataccaagaggagaagcaaaccaaaatagttaagt |
18805741 |
T |
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| Q |
113 |
tatagggaaatgcatgaacatatatatgttcatgactttgttttttcgcacaagagaaaggaaattgagggtctattttcattcatttcctagttagnnn |
212 |
Q |
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| T |
18805740 |
tatagggaaatgcatga----aaatatgttcatgactttgttttttcgcacaagagaaaggaaattgagggtctattttcattcatttcctatttag--t |
18805647 |
T |
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| Q |
213 |
nnnnnnnnnntgttggtaagatggatggtttttattagtttccaaaagaaaattcgaacaccattagaggcctggaccgtccaaataggctttcacagtt |
312 |
Q |
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| T |
18805646 |
ctctctctcttgttggtaagatggatggtttttattagtttccaaaagaaaattcgaacaccattagaggcctggaacgtccaaataggctttcacagtt |
18805547 |
T |
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| Q |
313 |
tcttacctctnnnnnnntgctccaagtatcccaattcttccctcctcctttaaca |
367 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18805546 |
tcttacctctaaaaaaatgctccaagtatcccaattcttccctcctcctttaaca |
18805492 |
T |
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