View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13405_low_5 (Length: 366)
Name: NF13405_low_5
Description: NF13405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13405_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 37113191 - 37113524
Alignment:
| Q |
16 |
atgaaaaggaaaaaatataactcacttggcagttccagtgttggagtcatcaacgactcttagtggccgatttctttgtgggcgactttcaatctgattt |
115 |
Q |
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| T |
37113191 |
atgaaaaggaaaaaatataactcacttggcagttccagtgttggagtcatcaacgactcttagtggccgatttctttgtgggcgactttcaatctgattt |
37113290 |
T |
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| Q |
116 |
catagtacataccattaaagtcgtcctttaataatcatcaactgagctagactaacaaaggaaatacttttccataccttggttaaatttatgtccctca |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37113291 |
catagtacataccattaaagtcgtcctttaatcatcatcaactgagctagactaacaaaggaaatacttttccataccttggttaaatttatgtccctca |
37113390 |
T |
|
| Q |
216 |
ttgcaaataccgccaaaaccttgaacagcaccccaggaccttcattcagcgtaaacacaatgcttgtctgaaaaataatgaatggttggttccagagaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37113391 |
ttgcaaataccgccaaaaccttgaacagcaccccaggaccttcattcagcgtaaacacaatgcttgtctgaaaaataatgaatgattggttccagagaat |
37113490 |
T |
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| Q |
316 |
ctagaagcgtgattatgatagaacagagtcaaag |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37113491 |
ctagaagcgtgattatgatagaacagagtcaaag |
37113524 |
T |
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