View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13406_high_1 (Length: 477)
Name: NF13406_high_1
Description: NF13406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13406_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 458
Target Start/End: Original strand, 4074098 - 4074565
Alignment:
| Q |
9 |
caagaatataaaccgacacaagctagtcccctaaatcaaaaaatttcaacaa-cttga--------cactaaagtaaatagctttgaaacaacttgacac |
99 |
Q |
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| T |
4074098 |
caagaaaataaaccgacacaagctagtcccctaaatcaaaaaaattcaacaaacgtgaagatgagacattaacgtaaatagctttgaaacaacttgacac |
4074197 |
T |
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| Q |
100 |
tctctatcaattagaagaaatggttaaggaagaaggagaaagaggtataaactttcttatataataattcaaaatataatttggggtccaaattgttcat |
199 |
Q |
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| T |
4074198 |
tctatatcaattagaagaaatggttaaggaagaaggagaaagaagtataaactttcttatataataattcaaaatataatttggggtccaaattgttcat |
4074297 |
T |
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| Q |
200 |
gaaatacaatattaaaattgttgtcttctactttacattcagttttcctagatgtgatagttggtg-aaaaaagggagcatctatgcttctaaaaacttc |
298 |
Q |
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| T |
4074298 |
gaaatacaatatcaaaattgttgtcttctactttacattcagttttcctagatgtgatagttggtgaaaaaaagggagcatctatgcttctaaaaacttc |
4074397 |
T |
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| Q |
299 |
aactttaggtgcttc----------caggaggtaaattaagtctagcaaatgattgttccagttgggatatgaacttctactatcgatttgtcaatctct |
388 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4074398 |
aactttaggtgcttcaaagtttggtcaggaggtaaattaagtctagcaaatgattgttccagttgggatatgaacttctcctatcgatttgtcaatctct |
4074497 |
T |
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| Q |
389 |
gtgttactaagcaaggttccacccaatatggtagtccgcgactattcaaagtctcgttctagttttcaag |
458 |
Q |
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| T |
4074498 |
gtgttactaagcaaggttccaccca--atggtagtccgcgactattcaaagtctcgttctagttttcaag |
4074565 |
T |
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