View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13406_high_3 (Length: 248)
Name: NF13406_high_3
Description: NF13406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13406_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 52874562 - 52874774
Alignment:
| Q |
18 |
ttttcatgtaaccttatatttgtactagtttatgatagtttcttaaatatgttatggagtgacttttaaatcatttggtatatcatgatgtaaagttaca |
117 |
Q |
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| T |
52874562 |
ttttcatgtaaccttatatttgtactagtttatgatagtttcttaaatatgttatggagtgacttttaaatcatttggtatatcatgatgtaaagttaca |
52874661 |
T |
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| Q |
118 |
ctttcatttaactagtgttttaacgatgcttaaattggaaatttataatcaatgaattacctcatcatgaatgctactatgcctttcctttcatctttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52874662 |
ctttcatttaactagtgttttaacgatgcttaaattggaaatttataatcaatgaattacctcatcatgaatgctactatgcctttcctttcatctttga |
52874761 |
T |
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| Q |
218 |
ctaccttctatat |
230 |
Q |
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| T |
52874762 |
ctaccttctatat |
52874774 |
T |
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