View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13406_low_2 (Length: 394)
Name: NF13406_low_2
Description: NF13406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13406_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 38286953 - 38286564
Alignment:
| Q |
1 |
gataggttaaagagggatttgccgactatcactgtattgtgatgattattatgtggcaaagaaaagaatcaacgacaatttcaattcattcattaattct |
100 |
Q |
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| T |
38286953 |
gataggttaaagagggatttgccgactatcactgtattatgatgattattatgtggcaaagaaaagaatcaacgacaatttcaattcattcattaattct |
38286854 |
T |
|
| Q |
101 |
atctatctatcaactcaaagcaaattatattgtaatttgtaaagcacacaataataataataaactccagcgactttgactttgccccacgtactccttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286853 |
atctatctatcaactcaaagcaaattatattgtaattcgtaaagcacacaataataataataaactccagcgactttgactttgccccacgtactccttg |
38286754 |
T |
|
| Q |
201 |
tacacacacattgtcccacacacatacatacaatatgcctgcttatattatgagatattctcatcagaccgccagggtcacgatagcaaagggttgatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38286753 |
tacacacacattgtcccacacacatacatacaatatgcctgcttatattatgagatattctcatcagatcgccagggtcacgatagcaaagggttgatca |
38286654 |
T |
|
| Q |
301 |
tgatagattggtatttgaaaatgatctcaaatatgaattgtatgattctcctcagtccaatcacacgatatacgatatatagttttcctc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38286653 |
tgatagattggtatttgaaaatgatctcaaatatgaattgtatgattctcctcagtccaatcacacgatatacgatatatagttttcctc |
38286564 |
T |
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