View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13406_low_3 (Length: 269)
Name: NF13406_low_3
Description: NF13406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13406_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 35313278 - 35313028
Alignment:
| Q |
1 |
ccctcaaatcccacaataacaactcttcctatacatcctctctcactctcttcggcaaattcctcctcaccggttcatccgacagagaaatcacaacatt |
100 |
Q |
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| T |
35313278 |
ccctcaaatcccacaataacaactcttcctacacatcctctctcactctcttcggcaaattcctcctcaccggttcatccgacagagaaatcacaacatg |
35313179 |
T |
|
| Q |
101 |
gaacagaaccacctatgaagaagacacaacaaccaacaataaagtaatagcaggaaaaggtgctgttaaatccttagtaattcaatcaaacaaaaacacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35313178 |
gaacagaaccacctatgaagaagacacaacaaccaacaataaagtaatagcaggaaaaggtgctgttaaatccttagtaattcaatcaaacaaaaacacc |
35313079 |
T |
|
| Q |
201 |
cttttcagtgctcatcaagaccataaaatccgtgtctggaaactaaccaac |
251 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35313078 |
cttttcagtgctcatcaagaccgtaaaatccgtgtctggaaactaaccaac |
35313028 |
T |
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