View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13407_high_1 (Length: 885)
Name: NF13407_high_1
Description: NF13407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13407_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Original strand, 3346393 - 3347014
Alignment:
| Q |
1 |
cacggatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccctactatcttgtaaatttagccactacacctaacgtttttatttcct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346393 |
cacggatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccctactatcttgtaaatttagccactacacctaacgtttttatttcct |
3346492 |
T |
|
| Q |
101 |
ttctgttctgtagccacaagcaattggtctgttgtattatttacttttctaatatctcatttctcgtctttatannnnnnnnnncaattctttttggatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
3346493 |
ttctgttctgtagccacaagcaattggtatattgtattatttacttttctaatatctcatttgtcgtctttatattttttttttcaattctttttggatt |
3346592 |
T |
|
| Q |
201 |
aaatatgttcttcatctcaataaaatataaatcttgtacttttaattcttacttaaggcnnnnnnnaattctaacaaaattattctgcacgtagtaatag |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
3346593 |
aaatatgttcttcatttcaataaaatataaatcttgtacttttaattcttacttaaggctttttttaattctaacaaaattattctgcaagtagtaatag |
3346692 |
T |
|
| Q |
301 |
tctctgatattcggttaacatctacttatgagtgannnnnnngcaagtatataacattataaaaagtttcttgcaaaattttgaatagtagtttcatttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3346693 |
tctctgatattcggttaacatctacttatgagtgatttttttgcaagtatataacattataaaaagtttcttgcaaaattttgaatagtagtttcatttt |
3346792 |
T |
|
| Q |
401 |
ttaagctagttttatcttaaaattttgacatataaacannnnnnnnnnnnnnnatgc-accaaatgatcgtaaatggtctagtattttctctaaataaaa |
499 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||| |||||||||||||||||||| |
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| T |
3346793 |
ttaagctagttttatcttaaaattttaacatataaaca-----ttttttttttatgcgaccaaatgattgtaaatggtcaagtattttctctaaataaaa |
3346887 |
T |
|
| Q |
500 |
acaaagtaaggatattannnnnnnngaacaagcaactaaggttattattattacacaaactcaggatattttgttgtttccctcttcttggtaaacttcc |
599 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
3346888 |
acaaagtaaggatattattttttttgaacaagcaactaaggttattattattacacaaactcaggatattttgttgtttccctctttttagtaaacttcc |
3346987 |
T |
|
| Q |
600 |
tttacctctttggttactgtcaaaaagat |
628 |
Q |
| |
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||||||||||| |||||||||| ||||| |
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| T |
3346988 |
tttacctcttt--ttactgtcaacaagat |
3347014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 67 - 438
Target Start/End: Original strand, 3331260 - 3331640
Alignment:
| Q |
67 |
aatttagccactacacctaacgtttttattt-cctttctgttctgtagccacaagcaattggtctgttgtattatttacttttctaatatctcatttctc |
165 |
Q |
| |
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|||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||| | | |||||||||||| ||||| ||||||||||||||| |
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| T |
3331260 |
aatttagccactacacataacgttttttttttcctttctattctgtagccacaagcaattgatatattgtattatttatttttccaatatctcatttctc |
3331359 |
T |
|
| Q |
166 |
gtctttatannnnnnnnnncaattctttttggattaaatatgttcttcatctcaataaaatataaatcttgtacttttaattcttacttaaggcnnnnnn |
265 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
3331360 |
gtctttatatttttttttg-aattctttttggattaaatatgttcttcatctcaataaaatatatatcttgtacttt-aattcttacttaaggctttttt |
3331457 |
T |
|
| Q |
266 |
naattctaacaaaattattctgcacgtagtaatagtctctgatattcggttaacatctacttatgagtgannnnnnngcaagtatataacattataaaaa |
365 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
3331458 |
tatttctaacaaaatcattctgcacgtagtaatagtctctgatattcggttaacatctacttatgagtgatttttttgcaag--tataacattataaaaa |
3331555 |
T |
|
| Q |
366 |
gtttcttg------------caaaattttgaatagtagtttcattttttaagctagttttatcttaaaattttgacatataaaca |
438 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| |
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| T |
3331556 |
gtttcttgcaaaataaagctcaaaattttgaatagtagtttcatttttaaagctagttttatcttaaaattttgatatagaaaca |
3331640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 620 - 841
Target Start/End: Original strand, 3347194 - 3347414
Alignment:
| Q |
620 |
caaaaagatatatgcaggatgataggttactgtcaaaataaatatgtggggtgggtggtaattaagtacttttgaatcnnnnnnngatcacgctagttat |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3347194 |
caaaaagatatatgcaggatgataggttactgtcaaaataaatatgt--ggtgggtggtaattaagtacttttgaatctttttttgatcacgctagttat |
3347291 |
T |
|
| Q |
720 |
tgtctgtcaccgtaaatagggttaga-nnnnnnnnnctttcaatta-ttttaaaagaaaaattgtcaagattagtcttcgaattatcgggaacggccctg |
817 |
Q |
| |
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|||| |||| ||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| || | |
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| T |
3347292 |
tgtc-atcactataaatagggtttgattttatttttttttcaattatttttaaaaggaaaattgtcaagattagtcttcgaattatcggaaacaacctta |
3347390 |
T |
|
| Q |
818 |
atgaaaattgtagtacaaataatt |
841 |
Q |
| |
|
||||| ||||| |||||||||||| |
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|
| T |
3347391 |
atgaagattgtcgtacaaataatt |
3347414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 3330318 - 3330378
Alignment:
| Q |
5 |
gatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccctactatcttgta |
66 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3330318 |
gatcctttcaaaa-caaagtagaacacattaacttcagccggacagcccctactatcttgta |
3330378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 636 - 680
Target Start/End: Original strand, 3350166 - 3350210
Alignment:
| Q |
636 |
ggatgataggttactgtcaaaataaatatgtggggtgggtggtaa |
680 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3350166 |
ggatgataggttactgtcaaaataaatatgtggggtgggtggtaa |
3350210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 833 - 870
Target Start/End: Original strand, 3348436 - 3348473
Alignment:
| Q |
833 |
caaataattatattgataaatcttcttcgttgtgatgt |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
3348436 |
caaataattatattgataaatcttcttcgttgtgatgt |
3348473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 606
Target Start/End: Original strand, 3349342 - 3349391
Alignment:
| Q |
557 |
aactcaggatattttgttgtttccctcttcttggtaaacttcctttacct |
606 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||| |||| |
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| T |
3349342 |
aactcaggatattttgttgtttccctctttgtggtaaatttccttgacct |
3349391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 459 - 514
Target Start/End: Original strand, 3331656 - 3331709
Alignment:
| Q |
459 |
ccaaatgatcgtaaatggtctagtattttctctaaataaaaacaaagtaaggatat |
514 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
3331656 |
ccaaatgattgtaaacggtcaagtattttctctaaat--aaacaaagtaaggatat |
3331709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 575
Target Start/End: Original strand, 3331773 - 3331816
Alignment:
| Q |
532 |
caactaaggttattattattacacaaactcaggatattttgttg |
575 |
Q |
| |
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||||||||| |||||||||||||||||| || |||||||||||| |
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|
| T |
3331773 |
caactaaggatattattattacacaaacgcatgatattttgttg |
3331816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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