View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13407_high_10 (Length: 239)
Name: NF13407_high_10
Description: NF13407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13407_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 28637245 - 28637344
Alignment:
| Q |
123 |
aatttttcatttgacaactttgtaattgatagataatccccaaacaa-ttttttgggggatataatttgctataatgaaaatttgactttgcaaaccacc |
221 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28637245 |
aattgttcatttgacaactttgtaattgatggataatccccaaacaatttttttgggggcaataatttgctataatgaaaatttgactttgcaaaccacc |
28637344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 28637176 - 28637254
Alignment:
| Q |
1 |
ttgtagatgtgatatcttttgctgatttatccattaacaattgagtttacataattcatcaagtaaagtaaattgttcat |
80 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
28637176 |
ttgtagatgtgatatctattgctgatttatccattaacaattgagttaacataattcatcaagt-aagtgaattgttcat |
28637254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University