View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13407_high_4 (Length: 355)
Name: NF13407_high_4
Description: NF13407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13407_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 336
Target Start/End: Complemental strand, 7056637 - 7056315
Alignment:
| Q |
14 |
atatcaatgggcaacgaaacacaaaccgaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7056637 |
atatcaatgggcaacgaaacacaaaccaaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaa |
7056538 |
T |
|
| Q |
114 |
aacgcttccaccacgtggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7056537 |
aacgcttccaccacgtggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacct |
7056438 |
T |
|
| Q |
214 |
gtccaccggaaacctaattcacgcttcctatctcctccgctctggcgacctaaatttcctcttctccgccccatattccccttccatttctctctcctcg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7056437 |
gtccaccggaaacctaattcacgcttcctatctcctccgctctggcgacctcaatttcctcttctccgccccatattccccttccatttctctctcctcg |
7056338 |
T |
|
| Q |
314 |
ccttcctcaaccgcctccattcc |
336 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7056337 |
ccttcctcaaccgcctccattcc |
7056315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 39642769 - 39642453
Alignment:
| Q |
20 |
atgggcaacgaaacacaaaccgaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaaaacgct |
119 |
Q |
| |
|
|||| |||||| ||||| | | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
39642769 |
atggccaacgagacacacaaccaaaccgggttcaagttagttgggtgcaaaaatttcatccgaaccaacccaaaaacagaccggttcaaagtaaaacact |
39642670 |
T |
|
| Q |
120 |
tccaccacgtggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacctgtccac |
219 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| ||||| |||| ||||||||||| ||||| || |||||||||||||| ||||||||||| ||||| |
|
|
| T |
39642669 |
tccaccacgtcgagttctggtgcaccgacgcaacaaacactgcacaccgtttctctcatggactcggcatgccaatcgtcgccaaatccgacctctccac |
39642570 |
T |
|
| Q |
220 |
cggaaacctaattcacgcttcctatctcctccgctctggcgacctaaatttcctcttctccgccccatattccccttccatttctctctcctcgccttcc |
319 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || ||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
39642569 |
cggaaaccttactcacgcttcctatctcctccgctccggtgacctcaatttcctcttcaccgccgcatattccccttccatttctctctcctcaccttcc |
39642470 |
T |
|
| Q |
320 |
tcaaccgcctccattcc |
336 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
39642469 |
tcaaccgcctccattcc |
39642453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 328
Target Start/End: Original strand, 39679475 - 39679773
Alignment:
| Q |
30 |
aaacacaaaccgaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaaaacgcttccaccacgt |
129 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||| ||||| || ||| || || ||||||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
39679475 |
aaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgtcagagccaacccaaaatcagaccggttcaatgtaaaacgcttccaccacgt |
39679574 |
T |
|
| Q |
130 |
ggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacctgtccaccggaaaccta |
229 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| || |||||||| ||||| || ||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
39679575 |
cgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgctaaatccgacctctccaccggaaaccta |
39679674 |
T |
|
| Q |
230 |
attcacgcttcctatctcctccgctctggcgacctaaatttcctcttctccgccccatattccccttccatttctctctcctcgccttcctcaaccgcc |
328 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39679675 |
actcacgcttcttatctcctccgctccggcgacctcaacttcctcttctccgccgcatattccccttccatttctctctcctcaccttcctcaaccgcc |
39679773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 37 - 336
Target Start/End: Complemental strand, 39638060 - 39637761
Alignment:
| Q |
37 |
aaccgaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaaaacgcttccaccacgtggaattc |
136 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||| ||| || || ||||||||||| ||||| |||||| | |||||||| |||||||| || ||| |
|
|
| T |
39638060 |
aacccaaaccgggttcaagttagttggatttaaaaacttcgtctgagccaacccaaaatcagacttattcaaattcaaacgctttcaccacgtcgagttc |
39637961 |
T |
|
| Q |
137 |
tggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacctgtccaccggaaacctaattcacg |
236 |
Q |
| |
|
|||||||| |||||||| |||||||||| || |||||||| ||||| || ||||||||||| |||||||||||||| ||||| |||| ||||| ||| | |
|
|
| T |
39637960 |
tggtgcactgacgcaacaaacaccgcacgccgattctctcacggactcggaatgccaatcgttgctaaatccgacctctccactggaatcctaactcatg |
39637861 |
T |
|
| Q |
237 |
cttcctatctcctccgctctggcgacctaaatttcctcttctccgccccatattccccttccatttctctctcctcgccttcctcaaccgcctccattcc |
336 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||| |||| |||||||| | || |||||||| ||||| |||||||| |||||| |||| ||||||||||| |
|
|
| T |
39637860 |
cttcctacctcctccgctccggcgacctcaatctccttttctccgcagcttactccccttctatttcactctcctcaccttccccaacggcctccattcc |
39637761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University