View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13407_low_3 (Length: 420)
Name: NF13407_low_3
Description: NF13407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13407_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 401
Target Start/End: Original strand, 3152275 - 3152672
Alignment:
| Q |
6 |
ctgataagtttgtaccgtataagcttaaatcggttggtcttaagtattttcattcatcatctacatttcaaggtttaggatggg--tgttggtggcatca |
103 |
Q |
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| T |
3152275 |
ctgataagtttgtaccatataagcttaaatcggttggtcttaagtattctcattaatcatctacatttcaaggtttaggatgggggtgttggtggcatca |
3152374 |
T |
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| Q |
104 |
tgctagaggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatctactatgtcatatctaaatagatccaaagttcct |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152375 |
tgctagaggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatctactatgtcatatctaaatagatccaaagttcct |
3152474 |
T |
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| Q |
204 |
ctgtctgatttggaggaaatagacatcaaaattggtgtgaaggaggtaaatattttcacaagactccaagtgttattttacgttgtaatttatttgcatt |
303 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
3152475 |
ctgtctgatttggaggaaatagtcatcaaaattggtgtgaaggaggtaaatattttcacaagactccaggtgttattatacgttgtaatttatttgcatt |
3152574 |
T |
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| Q |
304 |
tgcttacattatacttactttttgtttacatgttacagtgtctcagcatacgaaaagcttcgataatctcaacgttttctttgacaaatggtctcaag |
401 |
Q |
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| T |
3152575 |
tgcttacattatacttactttttgtttacatgttacagtgtctcagcatactaaaagcttcgataatctcaacgttttctttgacaaatggtctcaag |
3152672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 24231425 - 24231284
Alignment:
| Q |
110 |
aggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatctactatgtcatatctaaatagatccaaagttcctctgtct |
209 |
Q |
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| T |
24231425 |
aggaccatcaatgtatatggtgacagacgacttgtgtgtgagtccaatgtcgtccatttctactatgtcacttctaaaaagatcaaaagtcccactatct |
24231326 |
T |
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| Q |
210 |
gatttggaggaaatagacatcaaaattggtgtgaaggaggta |
251 |
Q |
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| T |
24231325 |
gatttggaggaaagagttatcaaaattggtgtcaaggaggta |
24231284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 267
Target Start/End: Complemental strand, 3493753 - 3493596
Alignment:
| Q |
110 |
aggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatctactatgtcatatctaaatagatccaaagttcctctgtct |
209 |
Q |
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| T |
3493753 |
aggaccatcaacgtacatggtgactgatagcttgtttgtgagtctaatgtcgtcaatatctacaatgttgtttctcaaaagatcaaaagttcgtctatct |
3493654 |
T |
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| Q |
210 |
gatttggaggaaatagacatcaaaattggtgtgaaggaggtaaatattttcacaagac |
267 |
Q |
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| T |
3493653 |
gatttggaagaaagagttatcaaaattggtgtgaaggaggtaagcattttctcaagac |
3493596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 252
Target Start/End: Original strand, 24239364 - 24239513
Alignment:
| Q |
103 |
atgctagaggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatctactatgtcatatctaaatagatccaaagttcc |
202 |
Q |
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| T |
24239364 |
atgctagagggccatcaatgttcatggtgacagacgacttggcagtgactccaatgtcttctgtaactgctctttcatatctaattagctcaaacgtccc |
24239463 |
T |
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| Q |
203 |
tctgtctgatttggaggaaatagacatcaaaattggtgtgaaggaggtaa |
252 |
Q |
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| T |
24239464 |
tctatctgacttagaggaaatggtcatcagaattggtgtaacggaggtaa |
24239513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 24150107 - 24150043
Alignment:
| Q |
106 |
ctagaggaccatcaacatacatgttggcagatgacttgcgtgtgactccaatgtcgtccatatct |
170 |
Q |
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|||||||||||| ||||| |||| || | || |||||| |||||||||||||||||| |||||| |
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| T |
24150107 |
ctagaggaccattaacattcatggtgaccgacgacttggttgtgactccaatgtcgtcaatatct |
24150043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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