View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13407_low_6 (Length: 278)
Name: NF13407_low_6
Description: NF13407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13407_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 31769378 - 31769626
Alignment:
| Q |
13 |
aaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacatatgacaatttacaaatttnnnnnnnnnnnnnnnnnncttga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31769378 |
aaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacatatgacaatttacaaattaaaaaaaaaaaaaaaaaaacttga |
31769477 |
T |
|
| Q |
113 |
aactaagtgcataccagaattcttgaagttacatcagtcatcagatgcagtcaattagttgttgataactttatgagtcatcttatagtactcactcaag |
212 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31769478 |
aactaagtgcataccagaattctagaagttacatcaatcatcagatgcagtcaattagttgttggtaactttatgagtcatcttatagtactcactcaag |
31769577 |
T |
|
| Q |
213 |
tcatgccatgtcaatcatccttgaagtataacttaccattattcttttt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31769578 |
tcatgccatgtcaatcatccttgaagtataacttaccattattcttttt |
31769626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 7605824 - 7606065
Alignment:
| Q |
13 |
aaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacatatgacaatttacaaatttnnnnnnnnnnnnnnnnnncttga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7605824 |
aaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacatatgacaatttacaaatttaaaaaaaaaatt-------ttga |
7605916 |
T |
|
| Q |
113 |
aactaagtgcataccagaattcttgaagttacatcagtcatcagatgcagtcaattagttgttgataactttatgagtcatcttatagtactcactcaag |
212 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7605917 |
aactaagtgcataccagaattctagaagttacatcaatcatcagatgcagtcaattagttgttggtaactttatgagtcatcttatagtactcactcaag |
7606016 |
T |
|
| Q |
213 |
tcatgccatgtcaatcatccttgaagtataacttaccattattcttttt |
261 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7606017 |
tcatgccatgtcaatcatcattgaagtataacttaccattattcttttt |
7606065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 14186523 - 14186450
Alignment:
| Q |
13 |
aaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacatatgacaatttacaaa |
86 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14186523 |
aaaatccaaaccaagtctaagtttattttcgtatgaattaaaagcaagtgttagaacataagacaatttacaaa |
14186450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 41812579 - 41812337
Alignment:
| Q |
13 |
aaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacatatgacaatttacaaatttnnnnnnnnnnnnnnnnnncttga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
41812579 |
aaaatccaaaccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacatacgacaatttacaaatttaaaaaaaaaaaat------ttga |
41812486 |
T |
|
| Q |
113 |
aactaagtgcataccagaattcttgaagttacatcagtcatcagatgcagtcaattagttgttgataactttatgagtcatcttatagtactcactcaag |
212 |
Q |
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|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
41812485 |
aactaagtgcataccagaattctagaagttacatcaatcatcagatgcagtcaattagttgttggtaactttatgagtcatcttatagttctcactcaag |
41812386 |
T |
|
| Q |
213 |
tcatgccatgtcaatcatccttgaagtataacttaccattattcttttt |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41812385 |
tcatgccatgtcaatcatccttgaagtataacttaccattattcttttt |
41812337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 20902532 - 20902576
Alignment:
| Q |
217 |
gccatgtcaatcatccttgaagtataacttaccattattcttttt |
261 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20902532 |
gccatgccaatcatccttgaagtataacttaccattattcttttt |
20902576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 20902351 - 20902404
Alignment:
| Q |
23 |
ccaagtctaagtttattttcatatgaattaaaagcaagtgttagaacatatgac |
76 |
Q |
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||||||| | || ||||| ||| |||| |||||||||||||||||||||||||| |
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| T |
20902351 |
ccaagtcaaggtctatttgcatgtgaactaaaagcaagtgttagaacatatgac |
20902404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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