View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13407_low_7 (Length: 261)
Name: NF13407_low_7
Description: NF13407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13407_low_7 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 179838 - 180079
Alignment:
| Q |
21 |
aactcttatatggtatcagattttcttgaagcttaacaacaccatacgatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
179838 |
aactcttatatggtatcagattttcttgaagcttaacagcaccataagatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatct |
179937 |
T |
|
| Q |
121 |
tattctaaatgcctcaatcaagttcaaattgtctcgcaaaaattttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaag-tatgggt |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
179938 |
tattctaaatgcctcaatcacgttcaaattgtctagcaaaaattttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggt |
180037 |
T |
|
| Q |
220 |
cacatagacggaaccacaccaattcaaacagaaactattatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180038 |
cacatagacggaaccacaccaattcaaacagaaactattatc |
180079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 1700225 - 1700463
Alignment:
| Q |
21 |
aactcttatatggtatcagattttcttgaagcttaacaacaccatacgatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1700225 |
aactcttatatggtatcagattttcttgaagcttaacagcactacacgatcctattttcaac---atggccaccaacccttccaacaccaaatcatctct |
1700321 |
T |
|
| Q |
121 |
tattctaaatgcctcaatcaagttcaaattgtctcgcaaaaattttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaag-tatgggt |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1700322 |
tattctaaatgcctcaatcacgttcaaactgtctcgcaaaaatttccgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggt |
1700421 |
T |
|
| Q |
220 |
cacatagacggaaccacaccaattcaaacagaaactattatc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1700422 |
cacatagacggaaccacaccaattcaaacagaaactattatc |
1700463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University