View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13408_low_1 (Length: 1067)
Name: NF13408_low_1
Description: NF13408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13408_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 995; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 995; E-Value: 0
Query Start/End: Original strand, 21 - 1063
Target Start/End: Original strand, 21283599 - 21284641
Alignment:
| Q |
21 |
aaaggggaaggtggagggggaggttttgggttgtggggaggagcagaaagggagatttgtggttgtggatgaagggtttgggttggaattggaggatttg |
120 |
Q |
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| T |
21283599 |
aaaggggaaagtggaaggtgaggttttaggttgtggggaggagcagaaggggagatttgtggtggtggatgaagggtttgggttggaattggaggatttg |
21283698 |
T |
|
| Q |
121 |
ttgagggcttcagcttatgtggtggggaagagtaggagtgggattgtttataaagttgttggtggagggaaagggtctgttccggcagcgacagtggcgg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21283699 |
ttgagggcttcagcttatgtggtggggaagagtaggagtgggattgtttataaagttgttggtggagggaaagggtctgttccggcagcgacagtggcgg |
21283798 |
T |
|
| Q |
221 |
ttagacggttgagtgagggcgacgatggtggtttacggtttaaggaatttgaggctgaggtggaggctattgggagactgagacaccctaatgttgtgcc |
320 |
Q |
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| T |
21283799 |
ttagacggttgagtgagggtgacgatggtggtttacggtttaaggaatttgaggctgaggtggaagctattgggagactgagacaccctaatgttgtgcc |
21283898 |
T |
|
| Q |
321 |
tttgagagcttattactatgctagtgatgagaaacttctcatcactgatttcattcgcaatggaagcttgcacactgctttgcatggtatcacttctcat |
420 |
Q |
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| T |
21283899 |
tttgagagcttattactatgctagtgatgaaaaacttctcatcactgatttcattcgcaatggaagcttgcacactgctttgcatggtatcgcttctcat |
21283998 |
T |
|
| Q |
421 |
actttttagttctttgtttaattagtctacattttgatttctatgtgaaaatctatgactttactttgatcaaattgtataaatctatgattaatgctta |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21283999 |
actttttagttctttgtttaattagtctacattttgatttctatgtgaaaatctatgactttacattgatcaaattgtataaatctatgattaatgctta |
21284098 |
T |
|
| Q |
521 |
atttggatgtcaatgtttgtttttgattgcaaattcatgtagtaaggaaatcacttttcaaatgctacatttagttttcttcttagttagtgtttggttc |
620 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284099 |
atttggatgtcaatgtttgtttttgattgcaaattcatgtagtaaggaaatcacttttcaaatgctacatttagttttcttcttagttagtgtttggttc |
21284198 |
T |
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| Q |
621 |
catagttgagaagaattgattttgtttattcccattaaacttaatcatagtgaaaacctatgtgtttggtcttcctcagacaaaccttagtttgactaga |
720 |
Q |
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| T |
21284199 |
catagttgagaagaattgattttgtttattcccattaaacttaatcatagtgaaaacctatgtgtttggtcttcctcagacaaaccttagtttgactaga |
21284298 |
T |
|
| Q |
721 |
tgttgtaatgtgataatgaataacttttggcttcatttgaaaaatctacactaatttacattctaagttaaaagagtaaaaatcatcaaaagtcacttta |
820 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21284299 |
tgttgtaatgtgataatgaataacttttggcttcatttgaaaaatctacactaatttacattctaagttaaaagagtaaaaatcatcaaaagtcacttta |
21284398 |
T |
|
| Q |
821 |
cctcaaattctttttaaagaaacattacttttaaactcagctgtaaccaaatcaactgtacatcaaacacttagtagtacagtgtcacttgtgatttggt |
920 |
Q |
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| T |
21284399 |
cctcaaattctttttaaagaaacattacttttaaactcagctgtaaccaaatcaactgtacatcaaacacttagtagtacagtgtcacttgtgatttggt |
21284498 |
T |
|
| Q |
921 |
tttggtatgagtaggtgacaaagtactattccttgtgagtgcacattgttgtcactgtgtggttgagttcaaattcttgttttttacttttgagagctaa |
1020 |
Q |
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| T |
21284499 |
tttggtatgagtaggtgacaaagtactattccttgtgagtgcacattgttgtcactgtgtggttgagttcaaattcttgttttttacttttgagagctaa |
21284598 |
T |
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| Q |
1021 |
tgatgttgccatgtgattgtggccatgatgatgatgtccatct |
1063 |
Q |
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| T |
21284599 |
tgatgttgccatgtgattgtggccatgatgatgatgtgcatct |
21284641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 997 - 1043
Target Start/End: Original strand, 38064249 - 38064295
Alignment:
| Q |
997 |
ttgttttttacttttgagagctaatgatgttgccatgtgattgtggc |
1043 |
Q |
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| T |
38064249 |
ttgttttttgcttttgagagctaataatgttgacatgtgattgtggc |
38064295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 633 - 677
Target Start/End: Complemental strand, 30598603 - 30598559
Alignment:
| Q |
633 |
gaattgattttgtttattcccattaaacttaatcatagtgaaaac |
677 |
Q |
| |
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|||||||||||| || ||||||||||||||||| ||||||||||| |
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| T |
30598603 |
gaattgattttggttgttcccattaaacttaattatagtgaaaac |
30598559 |
T |
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