View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13408_low_2 (Length: 579)
Name: NF13408_low_2
Description: NF13408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13408_low_2 |
 | |
|
| [»] scaffold0879 (2 HSPs) |
| | |
|
| [»] scaffold0565 (1 HSPs) |
| | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 87 - 565
Target Start/End: Complemental strand, 46993680 - 46993184
Alignment:
| Q |
87 |
gaaattatggtcaccatgaaattaaataaaaacatccaaactaaatcaatccaattccaacgtgaatcggctatggtttcttttgtagtagaaattaaag |
186 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46993680 |
gaaattatggtcgccatgaaattaaataaaaacatccaaactagatcaatccaattccaacgtgaatcggctagggtttcttttgtagtagaaattaaag |
46993581 |
T |
|
| Q |
187 |
agtcacttatgagatgtgatgaagataaagatga------gagaaattgaatggattaaaaagtattt-------------aattttggacttaacctta |
267 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
46993580 |
agtcacttatgagatgagatgaagatgaagatgaagatgagagaaattgaatggattaaaaagtattttatgttggactttaattttgggcttaacctta |
46993481 |
T |
|
| Q |
268 |
agtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaacc |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46993480 |
agtttgtgtgaggtacgataatattagtaaaataaggagtgtggttatcatcggattggttaatcggtttcacggatctcgaaatgaaaaaccatgaacc |
46993381 |
T |
|
| Q |
368 |
aaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaagatcaaatgnnnnnnnggtttggactttcaatttcgtcggttt |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||| | |||| |||||||||||| ||| ||| |
|
|
| T |
46993380 |
aaaccaaactagatcagtttcgattgattcggatcaatttcaaaccgacccaaacaaggtcgaatattttttagatttgaactttcaatttcatcgattt |
46993281 |
T |
|
| Q |
468 |
tatccgaaccacttccacctcctagctatcactactcaagaacattcataactcacttccattatgataaattaacgtagcttctctatttggttttg |
565 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46993280 |
tgtccgaaccacttccacc-cctagctatcactactcaagaacattcataactcacttccattatgataaattaacgtagcttctctatttggttttg |
46993184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 39695571 - 39695432
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtcaccatgaaattaaataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39695571 |
aaattaaaacatagtcaaaataacaaatccatgcaaactgaaattaaaacatcctgaaatttaaacatcatgaaattatggtcgccatgaaattaaataa |
39695472 |
T |
|
| Q |
116 |
aaacatccaaactaaatcaatccaattccaacgtgaatcg |
155 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39695471 |
aaacatccaaattaaatcaatccaattccaacgtgaatcg |
39695432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 208 - 413
Target Start/End: Original strand, 7352257 - 7352468
Alignment:
| Q |
208 |
aagataaagatgagagaaattgaatggattaaaaagtattt-------aattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaat |
300 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |||||| |||||||| |||| ||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
7352257 |
aagatgaagatgagagaaagtgaatggattaaaacgtattttatgtttaattttgggtctaactataagtttgtgtgacgtaggataatattagtaaaat |
7352356 |
T |
|
| Q |
301 |
aaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcaga |
400 |
Q |
| |
|
|| ||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| || |
|
|
| T |
7352357 |
aaggagtgtggttatcatcggattgatt-atcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcgga |
7352455 |
T |
|
| Q |
401 |
tcgatttcaaacc |
413 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
7352456 |
tcggtttcaaacc |
7352468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 246 - 425
Target Start/End: Complemental strand, 39695332 - 39695157
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatc |
345 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||| | |
|
|
| T |
39695332 |
tttaattttgggtctaaccataagtttgtgtgaggtaagataat----gtaaaataaggagtgaggttatcatcagattggttcatcggtttcacggacc |
39695237 |
T |
|
| Q |
346 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
39695236 |
tcgaaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaaccgaaccaaacaag |
39695157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 246 - 432
Target Start/End: Complemental strand, 7995196 - 7995013
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatc |
345 |
Q |
| |
|
||||||||||| || |||| |||||||||| ||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||| |
|
|
| T |
7995196 |
tttaattttggcct-aaccataagtttgtg--aggtaagataatattagtaaaataaggagtgtggttattatcggattggttcatcggtttcacgaatc |
7995100 |
T |
|
| Q |
346 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaagatcaaat |
432 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||| |||||| ||||||||| |||||| |
|
|
| T |
7995099 |
tcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaaccaaacaaggtcaaat |
7995013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 46993927 - 46993845
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46993927 |
aaattaaaacatagtcaaaataacaaatccatgcaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtc |
46993845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 11727326 - 11727407
Alignment:
| Q |
312 |
ttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattg |
393 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
11727326 |
ttatcatcggattggtttatcggttttacggatctcgaaatgaaaaaccacgaaccaaaccaaactagatcggttttgattg |
11727407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 7348763 - 7348849
Alignment:
| Q |
69 |
ctgaaatttaaacatcatgaaattatggtcaccatgaaattaaataaaaacatccaaactaaatcaatccaattccaacgtgaatcg |
155 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||| | || | ||||||||||||||| |||||| ||||| |
|
|
| T |
7348763 |
ctgaaattaaaacatcatgaaattatggtcgtcatgaaattaaataaaaactttcagattaaatcaatccaatttcaacgtaaatcg |
7348849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 272 - 397
Target Start/End: Original strand, 46265261 - 46265386
Alignment:
| Q |
272 |
tgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaac |
371 |
Q |
| |
|
||||||||| | || |||| ||||||||| | ||||| |||| ||||| |||||||||||||||| ||||||| |||||| |||| |||||||| |
|
|
| T |
46265261 |
tgtgtgaggaaggacaataatagtaaaatgaggagtggagttaacattgatttggttcatcggtttcttggatctcaaaatgacaaactgaaaaccaaac |
46265360 |
T |
|
| Q |
372 |
caaactagatcagtttcgattgattc |
397 |
Q |
| |
|
||||| ||||| |||| ||||||||| |
|
|
| T |
46265361 |
caaacaagatcggtttagattgattc |
46265386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 11727283 - 11727328
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatggaaactgaaatta |
61 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
11727283 |
aaattaaaacatagtcaaaatatcaaatccatacaaactgaaatta |
11727328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 403
Target Start/End: Original strand, 2197623 - 2197759
Alignment:
| Q |
267 |
aagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaac |
366 |
Q |
| |
|
|||| |||| |||| | ||||||||||||||||| ||||| |||| ||| || |||||| ||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
2197623 |
aagtgtgtgcgaggaaggataatattagtaaaatggggagtgaagttagcatcggtttggttgatcggtttcttggatctcaaaatgaaaaaccgagaac |
2197722 |
T |
|
| Q |
367 |
caaaccaaactagatcagtttcgattgattcagatcg |
403 |
Q |
| |
|
| || ||||| || || ||| ||||| ||||||||| |
|
|
| T |
2197723 |
ccaatcaaacaaggtcgatttagattggttcagatcg |
2197759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 481
Target Start/End: Original strand, 12471870 - 12471910
Alignment:
| Q |
441 |
ggtttggactttcaatttcgtcggttttatccgaaccactt |
481 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
12471870 |
ggtttggattttcaatttcatcggttttatccgaaccactt |
12471910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 214 - 486
Target Start/End: Original strand, 44223219 - 44223499
Alignment:
| Q |
214 |
aagatgagagaaattgaatggattaaaaa-gtattt-------aattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaaga |
305 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| |||||||| | ||||| ||||||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
44223219 |
aagatgagagaaagtgaatggattaaaaaagtattttatgtttaattttgggcctaaccataagtttgtgtgaggtaggataatatttgtaaaataagga |
44223318 |
T |
|
| Q |
306 |
gtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgat |
405 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| | |
|
|
| T |
44223319 |
gtgtggttatcatcggattggttcatcggtttcacggatctcgaaatgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggt |
44223418 |
T |
|
| Q |
406 |
ttcaaaccgacccaaacaagatcaaatgnnnnnnnggtttggactttcaatttcgtcggttttatccgaaccacttccacc |
486 |
Q |
| |
|
|| |||| || ||||||||||||| || ||||||||||||| |||||| |||||| |||||||||||| |||| |
|
|
| T |
44223419 |
tttaaactgaaccaaacaagatcatatattttttcggtttggactttcggtttcgttggttttgtccgaaccacttacacc |
44223499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 246 - 486
Target Start/End: Original strand, 7956272 - 7956512
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatc |
345 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
7956272 |
tttaattttgggcataaccataagtttgtgtgaggtaggataatattagtaaaataaggagtatggttatcatcggattggttcatcggtttcacatatc |
7956371 |
T |
|
| Q |
346 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaagatcaaatgnnnnnnnggttt |
445 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||| | | || |||| || ||| ||||| |
|
|
| T |
7956372 |
tcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaaccaaacaaagcaaggtcgaatattttttcggttt |
7956471 |
T |
|
| Q |
446 |
ggactttcaatttcgtcggttttatccgaaccacttccacc |
486 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||||| |||| |
|
|
| T |
7956472 |
ggactttcggtttcgttggttttgtccgaaccacttacacc |
7956512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 246 - 424
Target Start/End: Complemental strand, 35949079 - 35948903
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatc |
345 |
Q |
| |
|
||||||||||| | ||||| |||||||||| ||||| ||||||||||||||||||| || ||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
35949079 |
tttaattttgggcctaaccataagtttgtg--aggtaggataatattagtaaaataaggaatgttgttatcatcggattggttcatcggtttcatggatc |
35948982 |
T |
|
| Q |
346 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaa |
424 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| || |||||| ||||| ||||||||||| |||||||| |
|
|
| T |
35948981 |
tcgaaatgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaaccgaaccaaacaa |
35948903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 284 - 425
Target Start/End: Original strand, 17722390 - 17722531
Alignment:
| Q |
284 |
gataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatca |
383 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17722390 |
gataatattagtaaagtaatgagtgtggttatcatcggattggttcatcggtttcacagatctcgaaatgaaaaatcatgaaccaaaccaaactagatcg |
17722489 |
T |
|
| Q |
384 |
gtttcgattgattcagatcgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
||||||||| ||| ||| | ||||||||||| ||||||||| |
|
|
| T |
17722490 |
gtttcgattagttcggattggtttcaaaccgaaccaaacaag |
17722531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 35949274 - 35949203
Alignment:
| Q |
21 |
aaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaatt |
92 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35949274 |
aaaacatagtcaaaataacaaatccatgcaaactaaaattaaaacatcatgaaatttaaacatcatgaaatt |
35949203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 429
Target Start/End: Original strand, 34760832 - 34760921
Alignment:
| Q |
340 |
cggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaagatca |
429 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||||||||| |||| | ||| ||| | ||||||| |||||| ||||||||||||| |
|
|
| T |
34760832 |
cggatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatca |
34760921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 37379749 - 37379809
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatt |
76 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
37379749 |
aaattaaaacatactcaaaataacaaatccaaacaaactgaaattaaaacatcatgaaatt |
37379809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 3767626 - 3767735
Alignment:
| Q |
284 |
gataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatca |
383 |
Q |
| |
|
|||||||||| |||||| ||||| ||||| ||| || | |||||||||||| ||||||| |||| ||||||| |||||||||||||||||||| |
|
|
| T |
3767626 |
gataatattactaaaatggggagtgaggttagcatcggttcggttcatcggttcattggatctcaaaataaaaaaccgagaaccaaaccaaactagatcg |
3767725 |
T |
|
| Q |
384 |
gtttcgattg |
393 |
Q |
| |
|
|||| ||||| |
|
|
| T |
3767726 |
gtttagattg |
3767735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 9040587 - 9040519
Alignment:
| Q |
325 |
ggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattg |
393 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| |||||||||||||| ||||| |||| ||||| |
|
|
| T |
9040587 |
ggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattg |
9040519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 9040476 - 9040440
Alignment:
| Q |
441 |
ggtttggactttcaatttcgtcggttttatccgaacc |
477 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
9040476 |
ggtttggactttcgatttcatcggttttatccgaacc |
9040440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 214 - 429
Target Start/End: Original strand, 467 - 695
Alignment:
| Q |
214 |
aagatgagagaaattgaatggattaaaaagtatttaattttggactt-------------aaccttaagtttgtgtgaggtacgataatattagtaaaat |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || |||||||| |||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
467 |
aagatgagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaat |
566 |
T |
|
| Q |
301 |
aaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcaga |
400 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |||| ||| || |
|
|
| T |
567 |
aaggagtgtggttatcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcgga |
666 |
T |
|
| Q |
401 |
tcgatttcaaaccgacccaaacaagatca |
429 |
Q |
| |
|
||| ||||||||||| ||||||||||||| |
|
|
| T |
667 |
tcggtttcaaaccgaaccaaacaagatca |
695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 353 - 465
Alignment:
| Q |
20 |
taaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtcaccatgaaattaaataaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
353 |
taaaacatagtcaaaataacaaatacatgcaaactgaaattaaa-catcttgaaatttaaacatcattaaattatggtctccatgaaattaaataaaaac |
451 |
T |
|
| Q |
120 |
atccaaactaaatc |
133 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
452 |
atccaaactaaatc |
465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 214 - 429
Target Start/End: Original strand, 24466202 - 24466430
Alignment:
| Q |
214 |
aagatgagagaaattgaatggattaaaaagtatttaattttggactt-------------aaccttaagtttgtgtgaggtacgataatattagtaaaat |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || |||||||| |||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24466202 |
aagatgagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggtaggataatattagtaaaat |
24466301 |
T |
|
| Q |
301 |
aaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcaga |
400 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |||| ||| || |
|
|
| T |
24466302 |
aaggagtgtggttatcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcgga |
24466401 |
T |
|
| Q |
401 |
tcgatttcaaaccgacccaaacaagatca |
429 |
Q |
| |
|
||| ||||||||||| ||||||||||||| |
|
|
| T |
24466402 |
tcggtttcaaaccgaaccaaacaagatca |
24466430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 195 - 425
Target Start/End: Original strand, 23107775 - 23108022
Alignment:
| Q |
195 |
atgagatgtgatgaagataaagatgagagaaattgaatggattaaaaagtatttaattttggactt-------------aaccttaagtttgtgtgaggt |
281 |
Q |
| |
|
|||||||| ||||||||| | ||| ||||||| ||||||||||||||||||||| || |||||||| |||| |||||||||||||||| |
|
|
| T |
23107775 |
atgagatgagatgaagatgatgattagagaaagtgaatggattaaaaagtattttatgttggactttaattttgagcctaaccataagtttgtgtgaggt |
23107874 |
T |
|
| Q |
282 |
acgataatattagtaaaataaagagtgtggttatcattggatt----ggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaact |
377 |
Q |
| |
|
| ||||||||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23107875 |
aggataatattagtaaaataaggagtatggttatcatcggattgattggttcatcggtttcacggatctcgaaatgaaaaaccatgaatcaaaccaaact |
23107974 |
T |
|
| Q |
378 |
agatcagtttcgattgattcagatcgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
||||| |||||||||| ||| ||||| ||||||||| | ||||||||| |
|
|
| T |
23107975 |
agatcggtttcgattggttcggatcggtttcaaaccaaaccaaacaag |
23108022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 428
Target Start/End: Complemental strand, 4413681 - 4413526
Alignment:
| Q |
273 |
gtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaacc |
372 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4413681 |
gtgtgaggtaggataatactagtaaaataaggagtgtgattatcatcggattggtttatcggtttcacggatctcgaaatgaaaaaccatgaaccaaagc |
4413582 |
T |
|
| Q |
373 |
aaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaagatc |
428 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| ||| ||||||| |||||||||||| |
|
|
| T |
4413581 |
aaactagatcggtttcgattggttcggatcggttttaaaccgaaccaaacaagatc |
4413526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 246 - 424
Target Start/End: Original strand, 28319222 - 28319400
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatc |
345 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||| | |||||| ||| |
|
|
| T |
28319222 |
tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcagattgattcatcaggttcacgaatc |
28319321 |
T |
|
| Q |
346 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaa |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||| ||||| ||| || || ||||||||||| |||||||| |
|
|
| T |
28319322 |
tcgaaatgaaaaaccatgaaccaaaccaaattaaatcgattttgattggttcggaacggtttcaaaccgaaccaaacaa |
28319400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 4413801 - 4413685
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtcaccatgaaattaaataa |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4413801 |
aaattaaaaca--gtcaaaataacaaatccatgccaactgaaattaaaacattttgaaatttaaacatcatgaaattatggtcaccgtgaaattaaataa |
4413704 |
T |
|
| Q |
116 |
aaacatccaaactaaatca |
134 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4413703 |
aaacatccaaactaaatca |
4413685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 24466088 - 24466200
Alignment:
| Q |
20 |
taaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtcaccatgaaattaaataaaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
24466088 |
taaaacatagtcaaaataacaaatacatgcaaactgaaattaaa-catcttgaaatttaaacatcattaaattatggtctccatgaaattaaataaaaac |
24466186 |
T |
|
| Q |
120 |
atccaaactaaatc |
133 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24466187 |
atccaaactaaatc |
24466200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 209 - 425
Target Start/End: Original strand, 16584752 - 16584975
Alignment:
| Q |
209 |
agataaagatgagagaaattgaatggattaaaaagtattt-------aattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaata |
301 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16584752 |
agatgaagattagagaaagtgaatggattaaaaagtattttatgtttaattttgggtctaaccataagtttgtgtgaggtatgataatattagtaaaata |
16584851 |
T |
|
| Q |
302 |
aagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagat |
401 |
Q |
| |
|
| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| ||| ||| |
|
|
| T |
16584852 |
aggagtttggttatcatcagattggttcatcggtttcacggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggat |
16584951 |
T |
|
| Q |
402 |
cgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
|| ||||||||||| ||||||||| |
|
|
| T |
16584952 |
cggtttcaaaccgaaccaaacaag |
16584975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 246 - 393
Target Start/End: Original strand, 1161365 - 1161512
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatc |
345 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1161365 |
tttaattttgggctgaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcggattggttcatcggtttcacggata |
1161464 |
T |
|
| Q |
346 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1161465 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattg |
1161512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 25787629 - 25787491
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtcaccatgaaattaaataa |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| |||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
25787629 |
aaattaaaacatagtcaaaataaccaatccatgcaaattgaaattaaaacatccagaaatttaaacatcatgaaattatggacgccatgaaattaaataa |
25787530 |
T |
|
| Q |
116 |
aaacatccaaactaaatcaatccaattccaacgtgaatc |
154 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25787529 |
aaacattcaaactaaatcaatccaattccaacgtgaatc |
25787491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 289 - 491
Target Start/End: Complemental strand, 25785962 - 25785760
Alignment:
| Q |
289 |
tattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttc |
388 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
25785962 |
tattagtaaaataaagaatgtggttatcatcggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttc |
25785863 |
T |
|
| Q |
389 |
gattgattcagatcgatttcaaaccgacccaaacaagatcaaatgnnnnnnnggtttggactttcaatttcgtcggttttatccgaaccacttccacctc |
488 |
Q |
| |
|
||||| ||| ||||| ||||||||||| ||||||||| || || |||||| | ||||| |||||| |||||| |||||||||||| |||| | |
|
|
| T |
25785862 |
gattggttcggatcggtttcaaaccgaaccaaacaaggtcggatattttttcggtttgaaatttcagtttcgttggttttgtccgaaccacttacacccc |
25785763 |
T |
|
| Q |
489 |
cta |
491 |
Q |
| |
|
||| |
|
|
| T |
25785762 |
cta |
25785760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 247 - 425
Target Start/End: Complemental strand, 18461362 - 18461184
Alignment:
| Q |
247 |
ttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatct |
346 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||| |||||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18461362 |
ttaattttgggcttaaccataagtttgtgcgaggttggataatattaataaattaatgagtgtggttatcatcggattggttcatcggtttcacggatct |
18461263 |
T |
|
| Q |
347 |
cgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| ||| |||| ||||| | ||||||||||| ||||||| | ||||||| |
|
|
| T |
18461262 |
cgaaataaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaaccgaactaaacaag |
18461184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 209 - 428
Target Start/End: Complemental strand, 11620214 - 11619990
Alignment:
| Q |
209 |
agataaagatgagagaaattgaatggattaaaaagtattt-------aattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaata |
301 |
Q |
| |
|
|||| |||||| |||||| ||||| ||||||||||||||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
11620214 |
agatgaagatgggagaaagtgaattgattaaaaagtatttcatgtttaattttgggtttaaccataagtttgtg--aggtaggataatattagtaaaata |
11620117 |
T |
|
| Q |
302 |
aagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagat |
401 |
Q |
| |
|
| |||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||| |
|
|
| T |
11620116 |
agtagtgtgagtatcatcggattggttcatcggtttcacagatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattagtttggat |
11620017 |
T |
|
| Q |
402 |
cgatttcaaaccgacccaaacaagatc |
428 |
Q |
| |
|
|| |||||||| || |||||||||||| |
|
|
| T |
11620016 |
cggtttcaaactgaaccaaacaagatc |
11619990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 209 - 425
Target Start/End: Complemental strand, 8084288 - 8084062
Alignment:
| Q |
209 |
agataaagatgagagaaattgaatggattaaaaagtattt-------aattttggacttaaccttaagtttgtgtgaggtacgataat---attagtaaa |
298 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||||| ||||| ||||||| | ||||| | ||||||||||||||| ||||| ||||||||| |
|
|
| T |
8084288 |
agatgaagatgagagaaagtgaatagattaaaaattattttatgtttaattttgtgcctaaccatgagtttgtgtgaggtaggataaatggattagtaaa |
8084189 |
T |
|
| Q |
299 |
ataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattca |
398 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
8084188 |
ataaggagtgtggttatcatcggattgattcatcagtttcacggatcttgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcg |
8084089 |
T |
|
| Q |
399 |
gatcgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
||| | ||||||||| | ||||||||| |
|
|
| T |
8084088 |
gattggtttcaaaccaaaccaaacaag |
8084062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 18461454 - 18461359
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtcaccatgaaattaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || ||||||| | || ||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
18461454 |
aaattaaaacatagtcaaaataacaaatccatgcaaactaaacttaaaacttcctaaaatttaaacatcgtgaaattatggtcgccatgaaattaa |
18461359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 323
Target Start/End: Original strand, 42009922 - 42009999
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggat |
323 |
Q |
| |
|
||||||||| | | ||||| ||||||||||||||||| |||| ||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
42009922 |
tttaattttaggcctaaccataagtttgtgtgaggtaggatactattagtaatataaggagtgtggttatcatcggat |
42009999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 42009995 - 42010079
Alignment:
| Q |
340 |
cggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaa |
424 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||||| ||||| |||| || ||||| ||||||||||| |||||||| |
|
|
| T |
42009995 |
cggatctcaaaatgaaaaaccatgagtcaaactaaactagatcggtttcaattggtttggatcggtttcaaaccgaaccaaacaa |
42010079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 11620405 - 11620373
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatg |
48 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
11620405 |
aaattaaaacatagtcaaaataataaatccatg |
11620373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 217 - 425
Target Start/End: Original strand, 16746329 - 16746532
Alignment:
| Q |
217 |
atgagagaaattgaatggattaaaaagtatttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatc |
316 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||| ||| | ||||| ||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
16746329 |
atgagaaaaagtgaatggattaaaaattattt-----tgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgaggttatc |
16746423 |
T |
|
| Q |
317 |
attggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgac |
416 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||| ||||||||||| |
|
|
| T |
16746424 |
atcggattggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaa |
16746523 |
T |
|
| Q |
417 |
ccaaacaag |
425 |
Q |
| |
|
||||||||| |
|
|
| T |
16746524 |
ccaaacaag |
16746532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 246 - 424
Target Start/End: Complemental strand, 19947962 - 19947784
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatc |
345 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19947962 |
tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcatcggattggttcatcggtttcacggatc |
19947863 |
T |
|
| Q |
346 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaa |
424 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||||| |||||||| || ||||| |||||||| || |||||||| |
|
|
| T |
19947862 |
ttgaaatgaaaaaccatgaaccaaatcaaagtagatcagattcgattggtttggatcggtttcaaactgaaccaaacaa |
19947784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 246 - 425
Target Start/End: Complemental strand, 31896137 - 31895971
Alignment:
| Q |
246 |
tttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatc |
345 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
31896137 |
tttaattttgggcctaaccataagtttgtgtgaggtaggataatattagtaaaataaggagtgtggttatcat-------------cggtttcacggatc |
31896051 |
T |
|
| Q |
346 |
tcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
31896050 |
acgaaataaaaaatcatgaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaag |
31895971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 16746550 - 16746651
Alignment:
| Q |
324 |
tggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaaaca |
423 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||| ||||||||||| ||||||| |
|
|
| T |
16746550 |
tggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaaca |
16746649 |
T |
|
| Q |
424 |
ag |
425 |
Q |
| |
|
|| |
|
|
| T |
16746650 |
ag |
16746651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 16746098 - 16746130
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatg |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
16746098 |
aaattaaaacatagtcaaaataacaaatccatg |
16746130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 31111924 - 31111785
Alignment:
| Q |
16 |
aaattaaaacatagtcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtcaccatgaaattaaataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31111924 |
aaattaaaacatagtcaaaataacaaattcatgcaaactgaacttaaaacatcctgaaatttaaacatcatgaaattatggtcgccatgaaattaaataa |
31111825 |
T |
|
| Q |
116 |
aaacatccaaactaaatcaatccaattccaacgtgaatcg |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31111824 |
aaacatccaaactaaatcaatccaattccaacgtaaatcg |
31111785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 215 - 424
Target Start/End: Original strand, 13852163 - 13852379
Alignment:
| Q |
215 |
agatgagagaaattgaatggattaaaaagtattt-------aattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagt |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
13852163 |
agatgagagaaagtgaatggattaaaaaatattttatgtttaattttggtcataaccttaagtttgtgtgaggtaagataatattaataaaataaggagt |
13852262 |
T |
|
| Q |
308 |
gtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgattt |
407 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||| || ||||| ||| |
|
|
| T |
13852263 |
gtggttatcaacagattggttcatcggtttcacggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggttt |
13852362 |
T |
|
| Q |
408 |
caaaccgacccaaacaa |
424 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
13852363 |
caaaccgaatcaaacaa |
13852379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 209 - 425
Target Start/End: Complemental strand, 31111711 - 31111488
Alignment:
| Q |
209 |
agataaagatgagagaaattgaatggattaaaaagtattt-------aattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaata |
301 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||| ||||||| | ||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
31111711 |
agatgaagatgagagaaagtgaatgaattaaaaagtattttatatttaattttgcgcctaaccataattttgtgtgaggtaggataatattagtaaaata |
31111612 |
T |
|
| Q |
302 |
aagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagat |
401 |
Q |
| |
|
| ||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
31111611 |
agaagtgtggttatcaccagattggtttatcggtttcaaggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagat |
31111512 |
T |
|
| Q |
402 |
cgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
| ||||||||||| ||||||||| |
|
|
| T |
31111511 |
cagtttcaaaccgaaccaaacaag |
31111488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 284 - 425
Target Start/End: Complemental strand, 4638374 - 4638229
Alignment:
| Q |
284 |
gataatattagtaaaa----taaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactag |
379 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4638374 |
gataatattagtaaaagaattaaggagtgtggttatcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaaccaaactaa |
4638275 |
T |
|
| Q |
380 |
atcagtttcgattgattcagatcgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
|||||| | ||||| ||| ||||||||||||||||| || |||||| |
|
|
| T |
4638274 |
atcagtattgattggttcggatcgatttcaaaccgaaccgaacaag |
4638229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 284 - 381
Target Start/End: Complemental strand, 36009375 - 36009278
Alignment:
| Q |
284 |
gataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagat |
381 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36009375 |
gataatattagtaaaataaggagtgtggttatcatcggattgattcatcggtttcatggatctcgaaatgaaaaaccatgaaccaaaccaaactagat |
36009278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 38607182 - 38607073
Alignment:
| Q |
284 |
gataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatca |
383 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||| || ||||||||||||| | ||||||| ||||||||||||| ||||| |||||||| || ||| |
|
|
| T |
38607182 |
gataacattagtaaaatggcgagtgtggttagcatcaaatcggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtca |
38607083 |
T |
|
| Q |
384 |
gtttcgattg |
393 |
Q |
| |
|
|||| ||||| |
|
|
| T |
38607082 |
gtttagattg |
38607073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 247 - 420
Target Start/End: Complemental strand, 46655768 - 46655595
Alignment:
| Q |
247 |
ttaattttggacttaaccttaagtttgtgtgaggtacgataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatct |
346 |
Q |
| |
|
|||||||||| | ||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46655768 |
ttaattttgggcctaaccataaatttgtgtgaggtaggataatattagtaaaataagaagtgtggttatcattggattggttcatcggtttcacggatct |
46655669 |
T |
|
| Q |
347 |
cgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcagatcgatttcaaaccgacccaa |
420 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| ||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
46655668 |
cgaaatgaaaaagcatgaaccaaaccaaactagattggttttgattggttcggatcggtttcaaaccgaaccaa |
46655595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 46655846 - 46655765
Alignment:
| Q |
30 |
tcaaaataacaaatccatggaaactgaaattaaaacattctgaaatttaaacatcatgaaattatggtcaccatgaaattaa |
111 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
46655846 |
tcaaaataacaaatccatgcaaactgaatttaaaacatcttgaaatttaaacatcatgaaaatatggtcgccatgaaattaa |
46655765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 2095563 - 2095474
Alignment:
| Q |
154 |
cggctatggtttcttttgtagtagaaattaaagagtca--cttatgagatgtgatgaagataaagatgagagaaattgaatggattaaaaa |
242 |
Q |
| |
|
|||||| |||||||||| |||||||||| |||||||| || |||||||| ||||||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
2095563 |
cggctagggtttcttttttagtagaaatgaaagagtctggctaatgagatg-gatgaagataatgattagagaaagtgaatggattaaaaa |
2095474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 11503296 - 11503405
Alignment:
| Q |
284 |
gataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatca |
383 |
Q |
| |
|
||||||| ||||||||| ||||| ||||| ||| || | |||| ||||||||| ||||||| |||||||||| | ||||||||||||| ||||| |
|
|
| T |
11503296 |
gataataatagtaaaatggggagtgaggttagcatgggttcggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcg |
11503395 |
T |
|
| Q |
384 |
gtttcgattg |
393 |
Q |
| |
|
|||||||||| |
|
|
| T |
11503396 |
gtttcgattg |
11503405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 204 - 425
Target Start/End: Original strand, 1724 - 1955
Alignment:
| Q |
204 |
gatgaagataaagatgagagaaattgaatggattaaaaagtatttaattttggactt------------aaccttaagtttgtgtgaggtacgataatat |
291 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||||||||||||||| || ||||| || |||| |||||||||| ||||| ||||||| |
|
|
| T |
1724 |
gatgaagatgatgatgagagaaagtgaatggattaaaaagtattttatgttggattttaattttaacctaaccataagtttgtg--aggtagaataatat |
1821 |
T |
|
| Q |
292 |
tagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgat |
391 |
Q |
| |
|
||||||||||| |||||| |||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
1822 |
tagtaaaataaggagtgttgttatcatcggattggttcatcggtttcacgaatctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgat |
1921 |
T |
|
| Q |
392 |
tgattcagatcgatttcaaaccgacccaaacaag |
425 |
Q |
| |
|
|| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
1922 |
tggttccgatcgatttcaaaccgaaccaaacaag |
1955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 407
Target Start/End: Complemental strand, 13961 - 13839
Alignment:
| Q |
285 |
ataatattagtaaaataaagagtgtggttatcattggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcag |
384 |
Q |
| |
|
|||||| ||||||||| ||||| ||||| ||| || | | ||||||||||| ||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
13961 |
ataataatagtaaaatggggagtgaggttagcatcggttcgattcatcggtttattggatctcaaaatgaaaaaccgataaccaaaccaaataagatcag |
13862 |
T |
|
| Q |
385 |
tttcgattgattcagatcgattt |
407 |
Q |
| |
|
||| ||||| ||| | ||||||| |
|
|
| T |
13861 |
tttagattggttcggttcgattt |
13839 |
T |
|
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