View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13409_high_1 (Length: 1837)

Name: NF13409_high_1
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13409_high_1
NF13409_high_1
[»] chr5 (18 HSPs)
chr5 (20-1026)||(39675407-39676431)
chr5 (1218-1821)||(39674582-39675185)
chr5 (19-385)||(10873437-10873803)
chr5 (19-385)||(10878508-10878874)
chr5 (19-385)||(10883579-10883945)
chr5 (19-385)||(10866502-10866868)
chr5 (19-385)||(10887497-10887863)
chr5 (19-369)||(10046138-10046488)
chr5 (452-660)||(10866218-10866426)
chr5 (452-660)||(10873879-10874087)
chr5 (452-660)||(10878950-10879158)
chr5 (452-660)||(10884021-10884229)
chr5 (446-671)||(10887942-10888167)
chr5 (469-669)||(10045775-10045975)
chr5 (1049-1140)||(39675263-39675353)
chr5 (22-231)||(37948116-37948325)
chr5 (1719-1809)||(19968417-19968507)
chr5 (974-1027)||(10865768-10865823)
[»] chr3 (1 HSPs)
chr3 (1558-1808)||(34626172-34626433)
[»] chr8 (3 HSPs)
chr8 (20-231)||(30709477-30709688)
chr8 (1335-1394)||(32648313-32648372)
chr8 (1335-1376)||(4230554-4230595)
[»] chr1 (6 HSPs)
chr1 (1558-1671)||(51044747-51044865)
chr1 (1342-1395)||(4865830-4865883)
chr1 (1717-1780)||(40037525-40037588)
chr1 (1692-1735)||(51044880-51044923)
chr1 (1347-1381)||(40800284-40800318)
chr1 (1336-1381)||(48607771-48607816)
[»] chr2 (1 HSPs)
chr2 (1337-1416)||(5164813-5164892)
[»] chr6 (2 HSPs)
chr6 (1363-1425)||(3037595-3037658)
chr6 (1336-1394)||(33697122-33697180)
[»] chr4 (3 HSPs)
chr4 (1341-1379)||(32866976-32867014)
chr4 (1333-1378)||(49233814-49233859)
chr4 (1336-1381)||(50376671-50376716)


Alignment Details
Target: chr5 (Bit Score: 941; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 941; E-Value: 0
Query Start/End: Original strand, 20 - 1026
Target Start/End: Complemental strand, 39676431 - 39675407
Alignment:
Q  20 gaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676431 gaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccat 39676332  T
Q  120 cgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676331 cgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccat 39676232  T
Q  220 tggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676231 tggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaa 39676132  T
Q  320 gatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttggacaaggatttcctccggtagatttggcatgactt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676131 gatggaattgatccagacaccactgcaccaacaacctcctcatcttccatggacaaaactttttggacaaggatttcctccggtagatttggcatgactt 39676032  T
Q  420 tggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagc 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39676031 tggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagc 39675932  T
Q  520 aatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcg 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675931 aatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcg 39675832  T
Q  620 acggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttggttcttctttgttttgctgg 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675831 acggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctgctgcttttggttcttctttgttttgctgg 39675732  T
Q  720 agggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggaga 819  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675731 agggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaaatgaaaagaaagaaaggagttcagggaga 39675632  T
Q  820 ttgattggtaatttgtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagag----------------tga 903  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||    
T  39675631 ttgattggtaattggtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaagaataagagagtgagtgagagtgagagtga 39675532  T
Q  904 ggaagtttcatagttacatcgtaattaactcgtgcacaacgagggaatattgtagtaatgtcaagataatatattttgtggagatgctaacat--cacat 1001  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  39675531 ggaagtttcatagttagatcgtaattaactcgtgaacaacgagggaatattgtagtaatgtcaagataatatattttgtggagatgctaacatcacacat 39675432  T
Q  1002 catcacaagaagcctttacttgact 1026  Q
    |||||||||||||||||||||||||    
T  39675431 catcacaagaagcctttacttgact 39675407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1218 - 1821
Target Start/End: Complemental strand, 39675185 - 39674582
Alignment:
Q  1218 agctgacgtccattgatttattgaaatatttaactacacagtctattagcgtgagtttttcattcgaaattgtacaacacattgtatccatttttaaata 1317  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39675185 agctgacgtccattgatttattaaaatatttaactacacggtctattagcgtgagtttttcattcgaaattgtacaacacattgtatctatttttaaata 39675086  T
Q  1318 agctcacacactaaaattgtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattcat 1417  Q
    || ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| | |  |  |||||||||| |||||||||||||||||||    
T  39675085 agttcacacactaaaattgtgagtttaactcaattggttgagacgttgcattatatatgtaagaactgaggttcgaactccagataactcacttattcat 39674986  T
Q  1418 cttaaaaaggttaagttatttgaaaggnnnnnnngggtaactgaaataaatttaatagcatgcatggtaattcaattttattactaaactagattcggat 1517  Q
    |||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39674985 cttaaaaatgttaagttatttgaaaggaaaaaaagggtaactgaaataaatttaatagcatgcatggtaattcaattttattactaaactagattcggat 39674886  T
Q  1518 gatacaattactgagttggagggatcggctgcaaccaagtaactaatgaaacaagggattgatccagctacacataaacccttcctcaatgatgaatctc 1617  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39674885 gatacaattacttagttggagggatcggctgcaaccaagtaagtaatgaaacaagggattgatccagctacacataaacccttcctcaataatgaatctc 39674786  T
Q  1618 ttctaaagaagaaaggaaagatcaccaatgataatgccattgtctcaatctcaaagggatttagctacacacacaatgttagaatcctcacaggaatatt 1717  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39674785 ttctaaagaagaaaggaaagatcaccaacgataatgccattgtctcaatctcaaagggatttagctacacacacaatgttagaatcctcacaggaatatt 39674686  T
Q  1718 cagaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaacagaagccccaagaaaatttctcgtgaataagccagcgat 1817  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  39674685 cagaagcacttttaatgggtgatttgatcaatcactataatatcggtggattagcttgaacagaagccccaagaaaatttctcgtgaataagccagcaat 39674586  T
Q  1818 gatg 1821  Q
    ||||    
T  39674585 gatg 39674582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 10873437 - 10873803
Alignment:
Q  19 ggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttacca 118  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| || || ||     
T  10873437 ggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccg 10873536  T
Q  119 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttcca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10873537 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttcca 10873636  T
Q  219 ttggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagta 318  Q
    | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||    
T  10873637 tcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagta 10873736  T
Q  319 agatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 385  Q
    ||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10873737 agatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 10878508 - 10878874
Alignment:
Q  19 ggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttacca 118  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| || || ||     
T  10878508 ggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccg 10878607  T
Q  119 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttcca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10878608 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttcca 10878707  T
Q  219 ttggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagta 318  Q
    | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||    
T  10878708 tcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagta 10878807  T
Q  319 agatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 385  Q
    ||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10878808 agatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10878874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 10883579 - 10883945
Alignment:
Q  19 ggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttacca 118  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| || || ||     
T  10883579 ggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccg 10883678  T
Q  119 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttcca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10883679 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatgggcatctcgcaacactgtcctaatatagaatcgtaatcaaaaccttcca 10883778  T
Q  219 ttggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagta 318  Q
    | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||    
T  10883779 tcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagta 10883878  T
Q  319 agatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 385  Q
    ||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10883879 agatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10883945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 10866868 - 10866502
Alignment:
Q  19 ggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttacca 118  Q
    |||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||| ||||| || || ||     
T  10866868 ggaagccccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccg 10866769  T
Q  119 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttcca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||  || |||||||||||||    
T  10866768 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctatcggcatctcgcaacactgtcctaatatagaattgtagtcaaaaccttcca 10866669  T
Q  219 ttggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagta 318  Q
    | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||||||||||||||| ||||||||||||||    
T  10866668 tcggtaaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaatatttgctgcacgtcggcaatctccaagcttggattcaagcgagta 10866569  T
Q  319 agatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 385  Q
    ||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10866568 agatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10866502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 10887497 - 10887863
Alignment:
Q  19 ggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttacca 118  Q
    ||||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||| |||||||| || ||     
T  10887497 ggaagcacctccggaaacataaatagctttacagcctctgttggtgcttgcaaccaaacaaccttcggttgttgccatgggcaccgtgtattcattcccg 10887596  T
Q  119 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttcca 218  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||| ||    
T  10887597 tcgagcaacaaaggaccggcaacacccaccggaatttgaacaaaccctatcggcatctcgcaacactgtcctaatatagaatcgtagtcaaaacctttca 10887696  T
Q  219 ttggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagta 318  Q
    | ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||   || ||||| ||||||||||| |||||||| ||||| |||||    
T  10887697 tcggtaaaccttcaagtgaccttccggtaaccctctccactgcttggttcctaatctttgctgcacgacggcaatctccgagcttcgactcaagggagta 10887796  T
Q  319 agatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 385  Q
    ||| ||||||||||| || ||||||||||| |||||||| || |||||||| |||| ||||||||||    
T  10887797 agaaggaattgatcccgataccactgcaccgacaacctcttcgtcttccatggacataactttttgg 10887863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 163; E-Value: 3e-86
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 10046488 - 10046138
Alignment:
Q  19 ggaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttacca 118  Q
    |||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||| ||||| ||||| ||||| |||    
T  10046488 ggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaaccttccgtcgttgccatcggcaccgtgtactctttccca 10046389  T
Q  119 tcgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttcca 218  Q
    || ||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  10046388 tcaagcaacaaaggtccggcaactcccaccggaatctgaacaaatcctatcggcatctcacaacactgtcctaatatcgaatcataatcaaaaccttcca 10046289  T
Q  219 ttggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagta 318  Q
    ||||||||||    |||||| |||| |||||||||||||| |||||||| |  ||| | || ||||||  ||||||||| || || ||||||||||||||    
T  10046288 ttggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgcaatctccgagttttgattcaagcgagta 10046189  T
Q  319 agatggaattgatccagacaccactgcaccaacaacctcctcatcttccat 369  Q
     || |||||||  || |  ||||| ||||  |||||||| |||||||||||    
T  10046188 tgacggaattgtaccggttaccaccgcacggacaacctcgtcatcttccat 10046138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 129; E-Value: 6e-66
Query Start/End: Original strand, 452 - 660
Target Start/End: Complemental strand, 10866426 - 10866218
Alignment:
Q  452 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 551  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10866426 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10866327  T
Q  552 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 651  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10866326 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10866227  T
Q  652 tgttaagta 660  Q
    |||||||||    
T  10866226 tgttaagta 10866218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 129; E-Value: 6e-66
Query Start/End: Original strand, 452 - 660
Target Start/End: Original strand, 10873879 - 10874087
Alignment:
Q  452 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 551  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10873879 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10873978  T
Q  552 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 651  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10873979 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10874078  T
Q  652 tgttaagta 660  Q
    |||||||||    
T  10874079 tgttaagta 10874087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 129; E-Value: 6e-66
Query Start/End: Original strand, 452 - 660
Target Start/End: Original strand, 10878950 - 10879158
Alignment:
Q  452 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 551  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10878950 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10879049  T
Q  552 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 651  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10879050 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10879149  T
Q  652 tgttaagta 660  Q
    |||||||||    
T  10879150 tgttaagta 10879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 129; E-Value: 6e-66
Query Start/End: Original strand, 452 - 660
Target Start/End: Original strand, 10884021 - 10884229
Alignment:
Q  452 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 551  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10884021 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10884120  T
Q  552 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 651  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10884121 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10884220  T
Q  652 tgttaagta 660  Q
    |||||||||    
T  10884221 tgttaagta 10884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 118; E-Value: 2e-59
Query Start/End: Original strand, 446 - 671
Target Start/End: Original strand, 10887942 - 10888167
Alignment:
Q  446 acttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatct 545  Q
    ||||| ||||| || ||||||||||||| ||||||||||  ||||||||||||  |||||||||  | | |||| ||||||||||||| ||||| |||||    
T  10887942 acttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatct 10888041  T
Q  546 cggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaa 645  Q
    | |||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||     
T  10888042 cagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaac 10888141  T
Q  646 agtgtttgttaagtaaagtgaagaag 671  Q
    || ||||||||| || ||||||||||    
T  10888142 agcgtttgttaaatacagtgaagaag 10888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 89; E-Value: 4e-42
Query Start/End: Original strand, 469 - 669
Target Start/End: Complemental strand, 10045975 - 10045775
Alignment:
Q  469 atgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga 568  Q
    |||||| |||||| ||| ||||||||||||| ||||||| |||| | |||| ||||||||||| | | |   |||||| ||||||||||| ||||| |||    
T  10045975 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 10045876  T
Q  569 ggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaag 668  Q
    ||||| |||||||||||||| |||||||||| || ||||||||| || |||||||||||||| |||||||||||||  | |||||||||||| |||||||    
T  10045875 ggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaag 10045776  T
Q  669 a 669  Q
    |    
T  10045775 a 10045775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1049 - 1140
Target Start/End: Complemental strand, 39675353 - 39675263
Alignment:
Q  1049 tgtgcacagactaattaagttttaaaaaactagtgttattnnnnnnnncaaatttgaaagaaacaaagttttaaataattcgttgaacgtaa 1140  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||    
T  39675353 tgtgcacagactaattaagttttaaaaaactagtgttat-aaaaaaaacaaatttgaaagaaacaaagttttaaataattcattgaacgtaa 39675263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 37948325 - 37948116
Alignment:
Q  22 agcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccatcg 121  Q
    |||||||||||||||||| ||||||||||| ||||| || ||||| ||||| ||||| ||||| || || |||||||| || ||||||||    |||||     
T  37948325 agcaccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttctgtagtcgccattggaacagtgtattcaaatccatcc 37948226  T
Q  122 agcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccattg 221  Q
    | |||||| || || || |||||||||||||| |||| | ||||||  ||||| || ||||| || ||||| || |  || |||||||| ||||| | ||    
T  37948225 aacaacaatggtcccgccacacccaccggaatttgaatataccctaccggcatttcacaacactgccctaaaatcgcttcgtaatcaaatccttctaatg 37948126  T
Q  222 gtaaaccttc 231  Q
    ||||||||||    
T  37948125 gtaaaccttc 37948116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1719 - 1809
Target Start/End: Original strand, 19968417 - 19968507
Alignment:
Q  1719 agaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaacagaagccccaagaaaatttctcgtgaataag 1809  Q
    |||||||||| |||||||||||||||   ||||||||||||| ||| |  ||| ||||||| ||||  ||||||||||||||| |||||||    
T  19968417 agaagcacttctaatgagtgatttgaattatcactataatattggttgtatagttttaacaaaagcttcaagaaaatttctcgcgaataag 19968507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 974 - 1027
Target Start/End: Complemental strand, 10865823 - 10865768
Alignment:
Q  974 atattttgtggaga--tgctaacatcacatcatcacaagaagcctttacttgacta 1027  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||||| |||||||    
T  10865823 atattttgtggagagatgctaacattacatcatcactagaagcctttatttgacta 10865768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-53
Query Start/End: Original strand, 1558 - 1808
Target Start/End: Complemental strand, 34626433 - 34626172
Alignment:
Q  1558 aactaatgaaacaagggattgatccagctacacataaacccttcctcaatgat---gaatctcttctaaag-aaga-aaggaaagatcaccaatgataat 1652  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||   ||||||||| ||||| |||| ||||||| | || ||||||||||    
T  34626433 aactaatgaaacaagggattgatccagctacacataaacccttcatcaataatattgaatctcttataaaggaagagaaggaaaaaccatcaatgataat 34626334  T
Q  1653 gccattgtctcaatctcaa-----agggatt-tagctacacacacaatgttagaatcctcacaggaatattcagaagcacttttaatgagtgatttgatc 1746  Q
    |||| ||||||| ||||||     | | ||| ||||||||||||||||| ||||||||||||| || || |||||| | ||| ||||||||||||||||     
T  34626333 gccactgtctcactctcaacctcaaagaattctagctacacacacaatgctagaatcctcacatgactactcagaatcccttctaatgagtgatttgatt 34626234  T
Q  1747 aatcactataatatcggtggattagctttaacagaagccccaagaaaatttctcgtgaataa 1808  Q
    |||||||||||||| |||||||||||||||||||||||  |||||| ||||||  |||||||    
T  34626233 aatcactataatattggtggattagctttaacagaagcttcaagaatatttcttatgaataa 34626172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-41
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 30709477 - 30709688
Alignment:
Q  20 gaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaactaaacaaccttcagtggttgccattggcacggtgtattctttaccat 119  Q
    ||||| ||||||||||||| |||||||||||| ||||| || ||||||||||| | ||| ||||||||||| ||||| ||||| ||||| ||    ||||    
T  30709477 gaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttcagtggtagccatgggcacagtgtactcaactccat 30709576  T
Q  120 cgagcaacaaaggaccggcaacacccaccggaatctgaacaaaccctattggcatctcgcaacattgtcctaatatagaatcataatcaaaaccttccat 219  Q
    | | |||||  ||||| |||||||| |||||||| |||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||||||||     
T  30709577 ctaacaacagtggacccgcaacaccaaccggaatttgaacaaaccctatcggcatctcacaacactgtcccaatatcgaatcgtaatcaaaaccttccaa 30709676  T
Q  220 tggtaaaccttc 231  Q
     |||||||||||    
T  30709677 cggtaaaccttc 30709688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1335 - 1394
Target Start/End: Complemental strand, 32648372 - 32648313
Alignment:
Q  1335 tgtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaa 1394  Q
    ||||||||||||||| ||| | ||||||||| || |||||||||| |||||| |||||||    
T  32648372 tgtgagtttaactcaattgtttgagacgttgtataatatatgtagagatcggggttcgaa 32648313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1335 - 1376
Target Start/End: Original strand, 4230554 - 4230595
Alignment:
Q  1335 tgtgagtttaactcagttgatagagacgttgcattatatatg 1376  Q
    |||||||||||||| ||||||| |||| ||||||||||||||    
T  4230554 tgtgagtttaactctgttgataaagacattgcattatatatg 4230595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 1e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1558 - 1671
Target Start/End: Original strand, 51044747 - 51044865
Alignment:
Q  1558 aactaatgaaacaagggattgatccagctacacataaacccttcctcaatgatgaatctcttct----aaagaaga-aaggaaagatcaccaatgataat 1652  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||    || ||||| ||||||| | || ||||||||||    
T  51044747 aactaatgaaacaagggattgatccagctacacataaacccttgatcaataatgaatctcttcttgtaaaggaagagaaggaaaaaccatcaatgataat 51044846  T
Q  1653 gccattgtctcaatctcaa 1671  Q
    |||| |||||||| |||||    
T  51044847 gccactgtctcaacctcaa 51044865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1342 - 1395
Target Start/End: Complemental strand, 4865883 - 4865830
Alignment:
Q  1342 ttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaac 1395  Q
    |||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||    
T  4865883 ttaactcagttggtagggacattgcataatatatgtaggggtcggagttcgaac 4865830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1717 - 1780
Target Start/End: Complemental strand, 40037588 - 40037525
Alignment:
Q  1717 tcagaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaacag 1780  Q
    ||||||||| || ||||||| |||||||   ||||||||||||| ||||| |||||||||||||    
T  40037588 tcagaagcatttctaatgagcgatttgaattatcactataatattggtggtttagctttaacag 40037525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1692 - 1735
Target Start/End: Original strand, 51044880 - 51044923
Alignment:
Q  1692 aatgttagaatcctcacaggaatattcagaagcacttttaatga 1735  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||    
T  51044880 aatgctagaatcctcacatgaatattcagaagcacttctaatga 51044923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1347 - 1381
Target Start/End: Complemental strand, 40800318 - 40800284
Alignment:
Q  1347 tcagttgatagagacgttgcattatatatgtaggg 1381  Q
    ||||||||||||||| |||||||||||||||||||    
T  40800318 tcagttgatagagacattgcattatatatgtaggg 40800284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1336 - 1381
Target Start/End: Complemental strand, 48607816 - 48607771
Alignment:
Q  1336 gtgagtttaactcagttgatagagacgttgcattatatatgtaggg 1381  Q
    |||||||||||||||||||||| ||  ||||||| |||||||||||    
T  48607816 gtgagtttaactcagttgatagggatattgcattttatatgtaggg 48607771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 1337 - 1416
Target Start/End: Original strand, 5164813 - 5164892
Alignment:
Q  1337 tgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaactcaagataactcacttattca 1416  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||| ||||| |||||||   ||| | ||||||||||||    
T  5164813 tgagtttaacttagttgatagagatattgcattatatatgtaggggtcggaattcgaaccttagacatctcacttattca 5164892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1363 - 1425
Target Start/End: Complemental strand, 3037658 - 3037595
Alignment:
Q  1363 ttgcattat-atatgtagggatcggagttcgaactcaagataactcacttattcatcttaaaaa 1425  Q
    ||||||||| ||||||||||| ||| |||||||||  ||| ||| |||||||||||||||||||    
T  3037658 ttgcattatgatatgtagggagcggtgttcgaacttcagacaacccacttattcatcttaaaaa 3037595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1336 - 1394
Target Start/End: Complemental strand, 33697180 - 33697122
Alignment:
Q  1336 gtgagtttaactcagttgatagagacgttgcattatatatgtagggatcggagttcgaa 1394  Q
    ||||| |||||||||||||||| ||  ||||||| |||||| |||| ||||||||||||    
T  33697180 gtgagcttaactcagttgatagggatattgcattttatatgcaggggtcggagttcgaa 33697122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1341 - 1379
Target Start/End: Original strand, 32866976 - 32867014
Alignment:
Q  1341 tttaactcagttgatagagacgttgcattatatatgtag 1379  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  32866976 tttaactcaattgatagagacgttgcataatatatgtag 32867014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1333 - 1378
Target Start/End: Complemental strand, 49233859 - 49233814
Alignment:
Q  1333 attgtgagtttaactcagttgatagagacgttgcattatatatgta 1378  Q
    ||||| |||||||||||||||||||||||  ||||| |||||||||    
T  49233859 attgtaagtttaactcagttgatagagacaatgcataatatatgta 49233814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1336 - 1381
Target Start/End: Complemental strand, 50376716 - 50376671
Alignment:
Q  1336 gtgagtttaactcagttgatagagacgttgcattatatatgtaggg 1381  Q
    |||||||||||||||||| ||||||| |||||| ||||||| ||||    
T  50376716 gtgagtttaactcagttggtagagacattgcataatatatgcaggg 50376671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University