View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13409_high_12 (Length: 328)
Name: NF13409_high_12
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13409_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 23 - 312
Target Start/End: Original strand, 180057 - 180346
Alignment:
| Q |
23 |
caattcaaacagaaactattatcaacaatggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttct |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180057 |
caattcaaacagaaactattatcaacaacggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttct |
180156 |
T |
|
| Q |
123 |
ctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctcagttcaataacactgcacaa |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180157 |
ctcctccatgacaaaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctcagttcaataacactgcacaa |
180256 |
T |
|
| Q |
223 |
agggtgataagtccataactgattacttatttttagttaaaagtcttgttgacgaacttgcagttattgataagtctctttctgatgatg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180257 |
agggtgataagtccataactgattacttatttttagttaaaagtcttgctgacgaacttgcagttattgataagtctctttctgatgatg |
180346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 1700441 - 1700633
Alignment:
| Q |
23 |
caattcaaacagaaactattatcaacaatggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttcttct |
122 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1700441 |
caattcaaacagaaactattatcaacaacggtgtctctgctcccaatcctgattacacaaagtggttcactcttgatcagctaatcatcaatcttcttct |
1700540 |
T |
|
| Q |
123 |
ctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctcagttcaataacac |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1700541 |
ctcctccatgacagaggctgacagcatctcctttgcttcctatgaaactgctcgaaccttatgggttgctattgaatctcagttcaataacac |
1700633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 1700676 - 1700773
Alignment:
| Q |
215 |
ctgcacaaagggtgataagtccataactgattacttatttttagttaaaagtcttgttgacgaacttgcagttattgataagtctctttctgatgatg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1700676 |
ctgcacaaagggtgataagtccataactgattacttattttcagttaaaagtcttgctgacgaacttgcagttattgataagtctctttctgatgatg |
1700773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 5399261 - 5399385
Alignment:
| Q |
74 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgc |
173 |
Q |
| |
|
|||||||||| ||||||||| ||||||| || ||||||||||||||| ||||||| |||||||| || |||| || || ||||| |||||||| ||||| |
|
|
| T |
5399261 |
aatacacaaattggttcactattgatcaactcatcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatgacactgc |
5399360 |
T |
|
| Q |
174 |
tcgaaccttatgggttgctattgaa |
198 |
Q |
| |
|
| |||||| |||| ||| |||||| |
|
|
| T |
5399361 |
taaaaccttgtgggatgccattgaa |
5399385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 3540258 - 3540382
Alignment:
| Q |
74 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgc |
173 |
Q |
| |
|
|||||||||| ||||||||| |||| || || ||||||||||||||| |||||| |||||||| || |||| || || ||||| |||||||| ||||| |
|
|
| T |
3540258 |
aatacacaaattggttcactattgaccaactcatcatcaatcttcttatctcctttatgacagaagcagacagtatatcatttgcctcctatgacactgc |
3540357 |
T |
|
| Q |
174 |
tcgaaccttatgggttgctattgaa |
198 |
Q |
| |
|
| |||||| |||| ||| |||||| |
|
|
| T |
3540358 |
taaaaccttgtgggatgccattgaa |
3540382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 26593896 - 26593779
Alignment:
| Q |
74 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatgaaactgc |
173 |
Q |
| |
|
||||||| || |||||||| ||||||| |||| || |||||||| |||| ||||||| || ||||||| | |||||||| |||||||| ||||| |
|
|
| T |
26593896 |
aatacaccaattggttcaccattgatcaattaattataaatcttctcatctcatccatgattgaagctgacagtctttcctttgcctcctatgacactgc |
26593797 |
T |
|
| Q |
174 |
tcgaaccttatgggttgc |
191 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
26593796 |
tcgaaccctatgggttgc |
26593779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University