View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13409_high_5 (Length: 454)

Name: NF13409_high_5
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13409_high_5
NF13409_high_5
[»] chr4 (12 HSPs)
chr4 (15-326)||(7037556-7037867)
chr4 (29-231)||(6992506-6992711)
chr4 (34-236)||(7025825-7026027)
chr4 (29-224)||(7011225-7011420)
chr4 (29-224)||(7001134-7001327)
chr4 (15-198)||(7044440-7044623)
chr4 (25-209)||(7018884-7019068)
chr4 (25-195)||(7051525-7051695)
chr4 (319-428)||(7037255-7037371)
chr4 (277-339)||(7018582-7018644)
chr4 (424-454)||(7037100-7037130)
chr4 (424-454)||(7037206-7037236)
[»] chr3 (1 HSPs)
chr3 (37-152)||(46185214-46185329)
[»] chr2 (1 HSPs)
chr2 (36-101)||(5877122-5877187)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 7037867 - 7037556
Alignment:
Q  15 aatattaaacaatcatttgaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtcttt 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037867 aatattaaacaatcatttaaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtcttt 7037768  T
Q  115 ttgaggattattttctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttatgacacacaact 214  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037767 ctgaggattattttctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttatgacacacaact 7037668  T
Q  215 acattacttggcacactacacagtacacagccatttctatttcttgtttgcttgtacactcgttaaagaattgaattggcatacactaatggtataaaac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037667 acattacttggcacactacacagtacacagccatttctatttcttgtgtgcttgtacactcgttaaagaattgaattggcatacactaatggtataaaac 7037568  T
Q  315 agttttacacat 326  Q
    ||||||||||||    
T  7037567 agttttacacat 7037556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 6992711 - 6992506
Alignment:
Q  29 atttgaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttttgaggattatttt 128  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  6992711 atttgtaaattacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttttgaggatcgtttt 6992612  T
Q  129 ctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttat---gacacacaactacattacttgg 225  Q
    |||| |||||||||||||||||||||||||||||||||| || ||| || |||||||| |||||||||||| |||    |||||||||||||||||||||    
T  6992611 ctgatttgataaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatatatatgaacacacaactacattacttgg 6992512  T
Q  226 cacact 231  Q
    ||||||    
T  6992511 cacact 6992506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 34 - 236
Target Start/End: Complemental strand, 7026027 - 7025825
Alignment:
Q  34 aaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttttgaggattattttctgac 133  Q
    |||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7026027 aaaattacctatttcatacacaagtccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctgaggattattttctgac 7025928  T
Q  134 ttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttatgacacacaactacattacttggcacactac 233  Q
    || | |||||| || ||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||| ||||| |||||||||||||||||| ||    
T  7025927 tttacaaaatagtaaaacacttgcatgtcatcatttgaatctcctaaccccacgtacctatcaaatatatgatacacagctacattacttggcacacgac 7025828  T
Q  234 aca 236  Q
    |||    
T  7025827 aca 7025825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 7011420 - 7011225
Alignment:
Q  29 atttgaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttttgaggattatttt 128  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||    
T  7011420 atttgaaaattacctatttgatagagaaggccagaaatagaagagcaaccaggaccaccagttatccaaagcataagaggatctttctgaggattacttt 7011321  T
Q  129 ctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttatgacacacaactacattacttg 224  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||| || |||||||||||    
T  7011320 ctgactttacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaaatttatgacacataattacattacttg 7011225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 7001327 - 7001134
Alignment:
Q  29 atttgaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttttgaggattatttt 128  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||| |||    
T  7001327 atttgaaaattacctatttgatagaaaagggcagaaaaagaagaacaaccaggacctccagataaccaaagcataagaggatctttctgaggattacttt 7001228  T
Q  129 ctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttatgacacacaactacattacttg 224  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||||||||  || |||||||||||||||    
T  7001227 ctgatttgacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaaatttatg--acccaactacattacttg 7001134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 7044623 - 7044440
Alignment:
Q  15 aatattaaacaatcatttgaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtcttt 114  Q
    |||||| || ||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  7044623 aatattgaataatcactttaaaattacctatttgataggcaagggcagaaaaagaagaacaaccaggaccaccagatatccaaagcataagagggtcttt 7044524  T
Q  115 ttgaggattattttctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaa 198  Q
     | ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  7044523 cttaggattattttctgatttgacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaa 7044440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 7019068 - 7018884
Alignment:
Q  25 aatcatttgaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttttgaggatta 124  Q
    ||||| || ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  7019068 aatcactttaaaattacctatttgatgggcaaggccagaaaaagaagaacaaccaggaccaccagataaccaaagaattagagggtctttttgaggatta 7018969  T
Q  125 ttttctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttatgacaca 209  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| || ||| || || ||||| ||||||||||||||||||||||    
T  7018968 ttttctgactttacaaaataataaaacacttgcatgtcatcatctgtttcccctaatcccacgtacctatcaaatttatgacaca 7018884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 7051695 - 7051525
Alignment:
Q  25 aatcatttgaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttttgaggatta 124  Q
    ||||| || |||||||||||||| |||  |||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  7051695 aatcactttaaaattacctatttcataagcaagtccagaaaaagaagaacagccaggaccaccagataaccaaagcataagaggatctttctgaggatta 7051596  T
Q  125 ttttctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatc 195  Q
    ||||||||||| | |||||||||||||||||||||||| |||| || ||| || |||||||  ||||||||    
T  7051595 ttttctgacttaacaaaataatagaacacttgcatgtcgtcatctgtttcccctaaccccaagtacctatc 7051525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 319 - 428
Target Start/End: Complemental strand, 7037371 - 7037255
Alignment:
Q  319 ttacacatacatcaattaaattctaccacgcatataaatgtgaagatattttaaa--------aagtactcgttccgtttccttttaattgtcacttttt 410  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||    
T  7037371 ttacacatatatcaattaaattctaccacgcatataaatgtgaagatattttaaaaagtttaaaagtactcgttccgtttccttttaattgtcac-tttt 7037273  T
Q  411 gcagaaaaattatgtttc 428  Q
    |||| |||||||||||||    
T  7037272 gcaggaaaattatgtttc 7037255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 7018644 - 7018582
Alignment:
Q  277 ttaaagaattgaattggcatacactaatggtataaaacagttttacacatacatcaattaaat 339  Q
    ||||||||||| ||| |||||||||| | ||||||||||||||| ||||||||||||||||||    
T  7018644 ttaaagaattgtatttgcatacactattagtataaaacagttttgcacatacatcaattaaat 7018582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 454
Target Start/End: Complemental strand, 7037130 - 7037100
Alignment:
Q  424 gtttcaaagttcaatacaatattaaatattg 454  Q
    |||||||||||||||||||||||||||||||    
T  7037130 gtttcaaagttcaatacaatattaaatattg 7037100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 454
Target Start/End: Complemental strand, 7037236 - 7037206
Alignment:
Q  424 gtttcaaagttcaatacaatattaaatattg 454  Q
    |||||||||||||||||||||||||||||||    
T  7037236 gtttcaaagttcaatacaatattaaatattg 7037206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 46185214 - 46185329
Alignment:
Q  37 attacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttttgaggattattttctgacttg 136  Q
    ||||||||||| | || ||||||||||||||| ||| ||||||||||||||||||||||||||||  ||||| |||| || ||||||||| || ||||      
T  46185214 attacctatttcaaaggcaaggccagaaaaagcagagcaaccaggaccaccagttaaccaaagcaagagaggatcttgtttaggattattctcagactct 46185313  T
Q  137 ataaaataatagaaca 152  Q
    | |||||| |||||||    
T  46185314 aaaaaatagtagaaca 46185329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 5877187 - 5877122
Alignment:
Q  36 aattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagca 101  Q
    |||||||||||| ||| ||||||||||| |||| ||| |||||||| |||||||||| ||||||||    
T  5877187 aattacctatttcatacacaaggccagacaaagcagagcaaccaggtccaccagttagccaaagca 5877122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University