View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13409_high_8 (Length: 411)
Name: NF13409_high_8
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13409_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 26 - 402
Target Start/End: Complemental strand, 32204698 - 32204322
Alignment:
| Q |
26 |
gtggcttagagaggtattcatgacattaaaaagcgagtcaacttaactctgctcaaacttttatgtttattcagatgcattacaaaaagacttcatgcta |
125 |
Q |
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| T |
32204698 |
gtggcttagagaggtattcatgacattaaaaagcgagtcaacttaactctgctcaaacttttatgtttattcagattcattacaaaaagacttcatgcta |
32204599 |
T |
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| Q |
126 |
aagtcatgtacggttgtttggtgtatatttttattttcctatttcttgagattaatacatcaa-ctttcgttcttatttgtaaaatatgtttactgtatt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |
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| T |
32204598 |
aagtcatgtacggttgtttggtgtatatttttattttcctatttcttgagattaatacatcaagctttcgttctta-ttgtaaattatgtttactgtatt |
32204500 |
T |
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| Q |
225 |
gnnnnnnnccttggtgcatgtgcatcatgtataaaatatgttgtttccttgtaccggaatctatgttagttgacttgacacatgatattatattcaaact |
324 |
Q |
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| T |
32204499 |
gtttttttccttggtgcatgtgcatcatgtataaaatatgttgttttcgtgtaccggaatctatgttagttgacttgacacatgatattatattcaaact |
32204400 |
T |
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| Q |
325 |
tgtgaagttcacagcattctttcctttttaacccccctttatttgtgtggagtttaagatagatttcttcatattctt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32204399 |
tgtgaagttcacagcattctttcctttttaacccccctttatttgtgtggagtttaacatagatttcttcatattctt |
32204322 |
T |
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