View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13409_low_12 (Length: 375)
Name: NF13409_low_12
Description: NF13409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13409_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 11892134 - 11892490
Alignment:
| Q |
1 |
atctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccattgttgcaatcataacacttgcatcttttcccacccatac |
100 |
Q |
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| T |
11892134 |
atctacaactagcctcacaacaccaaatcaccattggtgataaattatgtaagtttaccattattgcaatcataacacttgcatcttttcccacccatac |
11892233 |
T |
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| Q |
101 |
acacacatatcacatgtttaaattttatgtactaatcaacaaaaactcttatttgttttcaggttctagttttcatcaaggaataaagtcgtccatttgg |
200 |
Q |
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| T |
11892234 |
acacacatatcacatgtttaaattttatgtactaatcaacaaaaactcttatttgttttcaggttctagttttcatcaaggaataaagtcgtccatttgg |
11892333 |
T |
|
| Q |
201 |
agcaaagtgaaacaactagctttctgtccaaattatttgatggccatcttgcacttcctaatcttattgtgttcaagtgactggctaatcaaaatgtgga |
300 |
Q |
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| T |
11892334 |
agcaaagtgaaacaactagctctctgtccaaattatttgatggccatcttgcacttcctaatcttattgtgttcaagtgactggctaatcaaaatgtgga |
11892433 |
T |
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| Q |
301 |
agcgagattaatttatttattatctctttgatttatatgtgcatagattgatatttc |
357 |
Q |
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| T |
11892434 |
agcgagattaatttatttattatctctttgatttatatgtgcatagattgatatttc |
11892490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 11906052 - 11906164
Alignment:
| Q |
236 |
tttgatggccatcttgcacttcctaatcttattgtgttcaagtgactggctaatcaaaatgtggaagcgagattaatttatttattatctctttgattta |
335 |
Q |
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| T |
11906052 |
tttgacggccatcttgcactttctaatcttattgggttcaagtgaaagacaaatcaagaagtggaagcgatattaatttatttgtgatctctttgattta |
11906151 |
T |
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| Q |
336 |
tatgtgcatagat |
348 |
Q |
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| T |
11906152 |
tttgtgcatagat |
11906164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 11883239 - 11883348
Alignment:
| Q |
236 |
tttgatggccatcttgcacttcctaatcttattgtgttcaagtgactggctaatcaaaatgtggaagcgagattaatttatttattatctctttgattta |
335 |
Q |
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|||| |||| |||||||||||||| ||||| | | |||||||||| | | |||||||| | |||||||||||||||||||| | |||||||||||||| |
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| T |
11883239 |
tttggtggcaatcttgcacttcctggtcttagtctattcaagtgacagacaaatcaaaagggagaagcgagattaatttatttgtgatctctttgattta |
11883338 |
T |
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| Q |
336 |
tatgtgcata |
345 |
Q |
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| T |
11883339 |
tttgtgcata |
11883348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 91 - 188
Target Start/End: Original strand, 11905832 - 11905929
Alignment:
| Q |
91 |
ccacccatacacacacatatcacatgtttaaattttatgtactaatcaacaaaaactcttatttgttttcaggttctagttttcatcaaggaataaag |
188 |
Q |
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|||||||| || ||||| || ||| |||||||| |||||| |||||||| |||| | |||||||||||||||||||| ||||| |||||||||||| |
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| T |
11905832 |
ccacccatgcatacacagataacacgtttaaatcttatgtgataatcaactaaaatttgtatttgttttcaggttctagctttcaccaaggaataaag |
11905929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 11905763 - 11905805
Alignment:
| Q |
19 |
aacaccaaatcaccattggtgataaattatgtaagtttaccat |
61 |
Q |
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| T |
11905763 |
aacaccaaagcaccattgatgataaatcatgtaagtttaccat |
11905805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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